R/BiomassWorkflow.R

#' BiomassWorkflow: A Helper Package for Microbial Biomass Data Analysis
#'
#' This package helps generate and analyze microbiome biomass data, prepare sequencing of microbiome samples, and analye sequencing data.
#'
#' @docType package
#' @name BiomassWorkflow
#' @import tidyverse
NULL

"%ni%" <- Negate("%in%")


# Work around for global variable issues in CMD Check
if (getRversion() >= "2.15.1") {
    utils::globalVariables(c("X.SampleID", "Taxon", "value", "absolute_abundance", "relative_abundance", "SampleMass", 
        "BarcodeID", "PlateID", "SampleWell", "vol_needed_for_PCR", "water_volume_up_PCR", "vol_needed_for_metagenomics", 
        "water_volume_up_metagenomics", "dna_concentration", "BarcodePlate", "BarcodeWell", "SequencingRun", "WaterSource", 
        "WaterWell", "DNASource", "DNASourceWell", "Destination", "DestinationWell", "DNA_Vol", "Water_Vol", "Warning", 
        "NormalizedVolume", "StartingConc", "FinalConc", "X16S_possible", ".", "SampleID", "BarcodeSequence", "LinkerPrimerSequence", 
        "Fluorescence", "ReaderWell", "Type", "metagenomics_possible", 'plate1_raw', 'plate2_raw', 'map1', 'map2', 'abundance', 
        'Full Mass', "Empty Mass", "rowname", "taxonomy", "Kingdom", 'total_dna', 'scale_factor', 'BR_dna_concentration', 'HS_dna_concentration', "i5_index", "i5_sequence", "i7_index", "i7_sequence", "dualIndex_i7_i5", "Full Weight", "Empty Weight", "Dry Weight", "Dried Weight", "Water Percentage", "Pellet Weight", "Dry Percentage", "BR_samples_raw", "BR_standard_mapping", "Empty_weights", "Full_weights", "HS_samples_raw", "HS_standard_mapping", "LocationColumn", "LocationRow", "Sample_info", "Standards_raw", "TubeBarcode", "TubeCode", "Tube_order", "mapping_file", "Other_Data")) 
}
econtijoch/Biomass-Workflow documentation built on May 15, 2019, 7:59 p.m.