README.md

In ecor/geotopOptim2: An R Plug-in to calibrate soil moisture output of the Distributed Hydrological Model GEOtop

geotopOptim2

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The R package geotopOtim2 is a plugin for the automatic calibration and sensitivity analisis of GEOtop 2.x hydrological model, based on the "Particle Swarm Optimisation" approach and the LHOAT "Latin-Hypercube One-factor-At-a-Time approach.

The package is a wrapper for GEOtop of the R package:

hydroPSO "Enhanced Particle Swarm Optimisation algorithm", wich has been updated to support MPI https://gitlab.inf.unibz.it/Samuel.Senoner/hydroPSO

To install this package on R fram R console:

Installation

From R console:

>library(devtools)

>install_github("ecor/geotopbricks")
>install.packages("hydroGOF")
>install.packages("hydroPSO")

In alternative, if you need to run the optimization on MPI over HPC cluster you need to install this modified version of hydroPSO

>install_git("https://gitlab.inf.unibz.it/Samuel.Senoner/hydroPSO")

Then, finally:

>install_github("EURAC-Ecohydro/geotopOptim2")

You might need before to intall also MPI under R and the R package snow

>install.packages("Rmpi") 
>install.packages("snow")

Package Documentetion: Vignette

ecor/geotopOptim2 documentation built on April 19, 2023, 4:35 a.m.