edward130603/BayesSpace
Clustering and Resolution Enhancement of Spatial Transcriptomes

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Search the edward130603/BayesSpace package
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Functions
97
Source code
16
Man pages
41
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edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
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API

API for edward130603/BayesSpace
Clustering and Resolution Enhancement of Spatial Transcriptomes

Global functions
.adjust_hex_centers Man page Source code
.bsData Man page Source code
.clean_chain Man page Source code
.compute_interspot_distances Man page Source code
.dirichlet_enhance Source code
.enhance_features Source code
.extract_indices Man page Source code
.find_neighbors Man page Source code
.flatten_matrix_list Man page Source code
.infer_param_dims Man page Source code
.init_cluster Man page Source code
.list2vec Man page Source code
.lm_enhance Source code
.make_hex_spots Man page Source code
.make_index_names Man page Source code
.make_spot_vertices Man page Source code
.make_square_spots Man page Source code
.make_subspot_coldata Man page Source code
.make_subspot_offsets Man page Source code
.make_triangle_subspots Man page Source code
.make_vertices Man page Source code
.prepare_inputs Man page Source code
.read_chain Man page Source code
.read_spot_pos Man page Source code
.select_spot_positions Man page Source code
.select_subspot_positions Man page Source code
.write_chain Source code
.xgboost_enhance Source code
BayesSpace Man page
Mode Man page Source code
cluster Man page Source code
clusterPlot Man page Source code
deconvolve Man page Source code
enhanceFeatures Man page Source code
exampleSCE Man page Source code
featurePlot Man page Source code
find_neighbors Man page Source code
getRDS Man page Source code
iterate Source code
iterate_deconv Source code
iterate_t Source code
iterate_t_vvv Source code
iterate_vvv Source code
mcmcChain Man page Source code
paraLapply Man page Source code
parallelize Man page
qPlot Man page Source code
qTune Man page Source code
read10Xh5 Man page Source code
readVisium Man page Source code
removeChain Man page Source code
spatialCluster Man page Source code
spatialEnhance Man page Source code
spatialPlot Man page
spatialPreprocess Man page Source code
edward130603/BayesSpace documentation built on May 11, 2023, 6:13 a.m.

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