Files in eeholmes/MARSS
Multivariate Autoregressive State-Space Modeling

.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/CSEGriskfigure.R R/CSEGtmufigure.R R/MARSS.R R/MARSSFisherI.r R/MARSS_dfa.r R/MARSS_marss.R R/MARSS_marxss.R R/MARSSaic.R R/MARSSapplynames.R R/MARSSboot.R R/MARSSharveyobsFI.R R/MARSShatyt.r R/MARSShessian.R R/MARSShessian_numerical.R R/MARSSinfo.R R/MARSSinits.R R/MARSSinnovationsboot.R R/MARSSkem.r R/MARSSkemcheck.r R/MARSSkf.r R/MARSSkfas.r R/MARSSkfss.R R/MARSSoptim.r R/MARSSparamCIs.R R/MARSSsimulate.R R/MARSSvectorizeparam.R R/augment_marssMLE.R R/autoplot_marssMLE.R R/checkMARSSInputs.r R/checkModelList.r R/coef_marssMLE.r R/describe_marssMODEL.R R/fitted_marssMLE.r R/glance_marssMLE.R R/is_marssMLE.r R/is_marssMODEL.R R/logLik_marssMLE.R R/model_frame_marssMODEL.R R/onLoad.R R/plot.marssMLE.R R/print_marssMLE.r R/print_marssMODEL.R R/progressBar.R R/residuals_marssMLE.R R/summary_marssMLE.R R/summary_marssMODEL.R R/tidy_marssMLE.R R/toLatex_marssMODEL.R R/utility_functions.R README.md
_config.yml
_layouts/default.html
data/SalmonSurvCUI.rda
data/graywhales.rda
data/grouse.rda
data/harborSeal.rda
data/harborSealWA.rda
data/isleRoyal.rda
data/ivesDataByWeek.rda
data/ivesDataLP.rda
data/kestrel.rda
data/lakeWAplankton.rda
data/loggerhead.rda
data/loggerheadNoisy.rda
data/okanaganRedds.rda
data/prairiechicken.rda
data/redstart.rda
data/rockfish.rda
data/wilddogs.rda
favicon.ico
inst/CITATION
inst/doc/Chapter_AnimalTracking.R inst/doc/Chapter_CombiningTrendData.R inst/doc/Chapter_Covariates.R inst/doc/Chapter_DFA.R inst/doc/Chapter_MARp.R inst/doc/Chapter_MLR.R inst/doc/Chapter_PVA.R inst/doc/Chapter_SealPopStructure.R inst/doc/Chapter_SealTrend.R inst/doc/Chapter_SpeciesInteractions.R inst/doc/Chapter_StructuralBreaks.R inst/doc/Chapter_UnivariateDLM.R inst/doc/Chapter_inits.R inst/doc/EMDerivation.pdf inst/doc/Quick_Start.pdf inst/doc/Residuals.pdf inst/doc/UserGuide.pdf
inst/doc/index.html
inst/doc/versiontest.R
logo.jpg
logot.png
man/CSEGriskfigure.Rd man/CSEGtmufigure.Rd man/MARSS-package.Rd man/MARSS.Rd man/MARSS_dfa.Rd man/MARSS_marss.Rd man/MARSS_marxss.Rd man/MARSSaic.Rd man/MARSSapplynames.Rd man/MARSSboot.Rd man/MARSSharveyobsFI.Rd man/MARSShatyt.Rd man/MARSShessian.Rd man/MARSShessian_numerical.Rd man/MARSSinfo.Rd man/MARSSinits.Rd man/MARSSinnovationsboot.Rd man/MARSSkem.Rd man/MARSSkemcheck.Rd man/MARSSkf.Rd man/MARSSoptim.Rd man/MARSSparamCIs.Rd man/MARSSsimulate.Rd man/MARSSvectorizeparam.Rd man/SalmonSurvCUI.Rd man/allowed.Rd man/as_marssMODEL.Rd man/augment_marssMLE.Rd man/checkMARSSInputs.Rd man/checkModelList.Rd man/coef_marssMLE.Rd man/fitted_marssMLE.Rd man/glance_marssMLE.Rd man/graywhales.Rd man/harborSeal.Rd man/is_marssMLE.Rd man/is_marssMODEL.Rd man/isleRoyal.Rd man/loggerhead.Rd man/marssMLE-class.Rd man/marssMODEL-class.Rd man/model_frame_marssMODEL.Rd man/plankton.Rd man/plot_marssMLE.Rd man/print_marssMLE.Rd man/print_marssMODEL.Rd man/residuals_marssMLE.Rd man/stdInnov.Rd man/tidy_marssMLE.Rd man/utility_functions.Rd man/zscore.Rd
vignettes/EMDerivation.Rnw
vignettes/EMDerivation.bib
vignettes/Makefile
vignettes/Quick_Start.Rnw
vignettes/Residuals.Rnw
vignettes/UserGuide.Rnw
vignettes/cbe.bst
vignettes/debug_manual.R
vignettes/debugger_template.Rnw
vignettes/figures/CAORWA.pdf
vignettes/figures/Fig1.jpg
vignettes/footmisc.sty
vignettes/hanging.sty
vignettes/manual_files/AR2SS100.RData
vignettes/manual_files/CS4--model.fits.Rdata
vignettes/manual_files/Case_Study_1.Rnw
vignettes/manual_files/Case_Study_2.Rnw
vignettes/manual_files/Case_Study_3.Rnw
vignettes/manual_files/Case_Study_4.Rnw
vignettes/manual_files/Case_Study_5.Rnw
vignettes/manual_files/Case_Study_6.Rnw
vignettes/manual_files/Case_Study_7.Rnw
vignettes/manual_files/Case_Study_8.Rnw
vignettes/manual_files/Case_study_dlm1.Rnw
vignettes/manual_files/Case_study_mlr.Rnw
vignettes/manual_files/Covariates.Rnw
vignettes/manual_files/Including_GH.Rnw
vignettes/manual_files/MARp.Rnw
vignettes/manual_files/Manual.Rnw
vignettes/manual_files/Quick_Examples.Rnw
vignettes/manual_files/Setting_Inits.Rnw
vignettes/svmono.cls
vignettes/tables/tablefit.tex
vignettes/tables/tableplank.tex
vignettes/tex/Algorithms.tex
vignettes/tex/Directions.tex
vignettes/tex/Functions.tex
vignettes/tex/Introduction.tex
vignettes/tex/MARSS.tex
vignettes/tex/Manual.bib
vignettes/tex/ModelSpec.tex
vignettes/tex/SSreferences.tex
vignettes/tex/dedic.tex
vignettes/tex/headerfile.tex
vignettes/tex/mathdefs.tex
vignettes/tex/obj_structures.tex
vignettes/tex/preface.tex
vignettes/tex/warnings.tex
eeholmes/MARSS documentation built on Nov. 4, 2018, 8:58 a.m.