API for egeulgen/pathfindR
Enrichment Analysis Utilizing Active Subnetworks
| Global functions | |
|---|---|
| .onAttach | Source code |
| UpSet_plot | Man page Source code |
| active_snw_enrichment_wrapper | Man page Source code |
| active_snw_search | Man page Source code |
| annotate_term_genes | Man page Source code |
| check_java_version | Man page Source code |
| cluster_enriched_terms | Man page Source code |
| cluster_graph_vis | Man page Source code |
| color_kegg_pathway | Man page Source code |
| combine_pathfindR_results | Man page Source code |
| combined_results_graph | Man page Source code |
| configure_output_dir | Man page Source code |
| create_HTML_report | Man page Source code |
| create_kappa_matrix | Man page Source code |
| download_KGML_file | Man page Source code |
| download_kegg_png | Man page Source code |
| enrichment | Man page Source code |
| enrichment_analyses | Man page Source code |
| enrichment_chart | Man page Source code |
| fetch_gene_set | Man page Source code |
| fetch_java_version | Man page Source code |
| filterActiveSnws | Man page Source code |
| fuzzy_term_clustering | Man page Source code |
| get_biogrid_pin | Man page Source code |
| get_gene_sets_list | Man page Source code |
| get_kegg_gsets | Man page Source code |
| get_mgsigdb_gsets | Man page Source code |
| get_pin_file | Man page Source code |
| get_reactome_gsets | Man page Source code |
| gset_list_from_gmt | Man page Source code |
| hierarchical_term_clustering | Man page Source code |
| hyperg_test | Man page Source code |
| input_processing | Man page Source code |
| input_testing | Man page Source code |
| isColor | Man page Source code |
| obtain_colored_url | Man page Source code |
| pathfindR | Man page |
| pathfindR-package | Man page |
| plot_scores | Man page Source code |
| process_pin | Man page Source code |
| return_pin_path | Man page Source code |
| run_pathfindR | Man page Source code |
| score_terms | Man page Source code |
| single_iter_wrapper | Man page Source code |
| summarize_enrichment_results | Man page Source code |
| term_gene_graph | Man page Source code |
| term_gene_heatmap | Man page Source code |
| visualize_active_subnetworks | Man page Source code |
| visualize_hsa_KEGG | Man page Source code |
| visualize_term_interactions | Man page Source code |
| visualize_terms | Man page Source code |
