README.md

In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

epic

The epic package provides tools for integrative analysis and visualization of epigenomic sequencing data such as whole genome bisulfite sequencing, ChIP-Seq and RNA-Seq.

Functions that deal with general genomic regions

• basic_genomic_regions_stat()
• annotate_to_gene_models()
• annotate_to_genomic_features()
• genomic_regions_correlation()
• subgroup_specific_genomic_regions()

Functions that analyze methylation data

• wgbs_qcplot()
• global_methylation_distribution()
• plot_multiple_samples_methylation_on_genome()
• heatmap_diff_methylation_in_genomic_features()
• methylation_subtype_classfication()

Functions that analyze ChIP-Seq data

• chromatin_states_transition_chord_diagram()

Functions that do integrative analysis

• correlated_regions()
• cr_enriched_at_tss()
• cr_hilbert()
• cr_gviz()
• enriched_heatmap_list_on_gene()
• enriched_heatmap_list_on_tss_cgi()
• enriched_heatmap_list_on_genomic_features()

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.