#' @title Initial HCR objects
#'
#' @description XXX
#'
#' @export
#'
#' @param ctr Control list
hcr_set_dimensions <- function(ctr) {
d <- list()
HRATE <- ctr$HRATE
nR <- ctr$nR
a1 <- ctr$a1
a2 <- ctr$a2
n_ages <- a2 - a1 + 1
y1 <- ctr$y1
y2 <- ctr$y2
n_years <- y2 - y1 + 1
iter <- ctr$iter
# array with age as a dimention
x <- array(-1,dim=c(n_ages,n_years,length(HRATE),iter),
dimnames=list(age=a1:a2,
year=y1:y2,
hrate=HRATE,
iter=1:iter))
d$N <- d$tF <- d$M <- d$pM <- d$pF <- d$selF <- d$selD <- d$selB <- d$C <- d$cW <-
d$sW <- d$cvcW <- d$cvsW <- d$mat <- x
# arrays without an age dimention
x <- array(-1,dim=c(n_years,length(HRATE),iter),
dimnames=list(year=y1:y2,
hrate=HRATE,
iter=1:iter))
d$TAC <- d$assError <- x
# array for recruit is based on year classes
startYC <- y1-nR # most recent year class with measurement
nYC <- y2-startYC+1 # number of year classes that need to be
# simulated
x <- array(-1,dim=c(nYC,length(HRATE),iter),
dimnames=list(yearclass=startYC:y2,
hrate=HRATE,
iter=1:iter))
d$cvR <- x
#
d$cvcW <- hcr_set_wgtErrors(d$cvcW,ctr)
d$cvsW <- d$cvcW
#
if(is.null(ctr$ssb_pars)) {
d$cvR <- hcr_set_recErrors(d$cvR,ctr)
} else {
d$cvR <- hcr_set_recErrors2(d$cvR,ctr)
}
#
d$assError <- hcr_set_assErrors(d$assError,ctr)
#X <<- d
return(d)
}
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