README.md

Nonparametric Microbial Interdependence Test (NMIT)

The paper to descrbied the method is avaliable

Zhang, Yilong, Sung Won Han, Laura M. Cox, and Huilin Li. "A multivariate distanceā€based analytic framework for microbial interdependence association test in longitudinal study." Genetic Epidemiology (2017).

R package

An R package for Nonparametric Microbial Interdependence Test (NMIT)

Installation

I assume that all auxillary packages are already installed

From an interactive R session:

library(devtools)
install_github("elong0527/NMIT")
library(NMIT)

Python

NMIT is avaliable in https://qiime2.org/ at nmit. A tutorial is also avaliabe (link).



elong0527/NMIT documentation built on May 16, 2019, 3:56 a.m.