writeBEDfiles: writeBEDfiles

Description Usage Arguments

View source: R/dataProcessing.R

Description

This function generates BED files from dataframe based on the information in case, control, gain and loss columns.

Usage

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writeBEDfiles(features, dfName = NULL, ChrCol = "chr", StartCol = "start",
  EndCol = "end", ControlCol = "control", CaseCol = "case",
  DupCol = "dup", DelCol = "del", IDCol = "case_id", path = NULL)

Arguments

features

Input dataframe.

dfName

String id to output file.

ChrCol

Chromosome colomn.

StartCol

Start positions column.

EndCol

End positions column.

ControlCol

Binary target to controls.

CaseCol

Binary target to cases.

DupCol

Binary target to duplication/gains.

DelCol

Binary target to deletion/loss.

IDCol

Column holding features IDs.


enriquea/cnveR documentation built on May 13, 2017, 6:09 p.m.