#####rlang .data prevents R CMD check from giving a NOTE about undefined global variables
#' @import data.table
#' @import limma
#' @import affy
#' @import ggplot2
#' @import scatterplot3d
#' @import RColorBrewer
#' @import grDevices
#' @import scales
#' @import GGally
#' @import GOtest
#' @import ape
#' @import pheatmap
#' @import ComplexHeatmap
#' @import circlize
#' @import multiplot
#' @import addgrids3d
#' @import ModClusterR
#' @import methods
#' @import ggrepel
#' @importFrom utils read.table write.table combn
#' @importFrom stats cor model.matrix as.dist hclust cutree quantile lm var prcomp kmeans
#' @importFrom graphics plot text legend par
#' @importFrom cluster pam
###
tpm <- setClass(
Class = "tpm",
slots = c(tpm.value = "matrix", grps = "character"),
validity = function(object){
if (nrow(object@tpm.value) < 1) {
return("Empty tpm.value matrix was given.")
}
if (length(object@grps) < 1) {
return("Empty grps was given")
}
return(TRUE)
}
)
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