not-package/notes/test_data.R
In eriqande/SNPcontam: Detecting contaminated samples from SNP genotypes
zeros <- t(matrix(c(40,160,50,80,100,20,30,15,140),nrow=3))
ones <- 200 - zeros
genos <- t(matrix(c(1,2,0,2,1,0,1,0,0,1,2,2,1,1,1),nrow=5))
data <- matrix(c(1,2,1,0,2,0,2,0,0,0,1,2,0,0,1),nrow=3)
clean_data <- P_likelihood(zeros,ones,genos,.5)
contam_data <- Pcontam(zeros,ones,genos,.5)
eriqande/SNPcontam documentation built on May 16, 2019, 8:44 a.m.
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zeros <- t(matrix(c(40,160,50,80,100,20,30,15,140),nrow=3))
ones <- 200 - zeros
genos <- t(matrix(c(1,2,0,2,1,0,1,0,0,1,2,2,1,1,1),nrow=5))
data <- matrix(c(1,2,1,0,2,0,2,0,0,0,1,2,0,0,1),nrow=3)
clean_data <- P_likelihood(zeros,ones,genos,.5)
contam_data <- Pcontam(zeros,ones,genos,.5)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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