plotGenotypeAndMarkerList: Plot a list of genotypes and markers An extension of...

Description Usage Arguments

View source: R/parseAndPlot.R

Description

Plot a list of genotypes and markers An extension of plotGenotypeAndMarkerTable to plot multiple populations/generations.

Usage

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plotGenotypeAndMarkerList(genotypeAndMarkerList, calcFreqs = T,
  chromPos = NULL, markers = NULL, internal = F)

Arguments

genotypeAndMarkerList

a list where each element is a genotypeAndMarkerTable

calcFreqs

Do allele frequencies need to be calculated from the table (see summarize in parseAllGenotypes function)

chromPos

optional matrix with two columns (chromosome and position). If given, only these positions will be plotted

markers

optional vector of variants. if given, only these variants will be plotted.

internal

generate plot (FALSE) or just return plotting dataframe (TRUE)?


eyalbenda/bulkPop documentation built on May 17, 2019, 11:14 p.m.