facilebio/FacileAnalysis
Modularized and interactive analyses over a FacileDataStore

Package index
Search the facilebio/FacileAnalysis package
Vignettes
Functions
254
Source code
35
Man pages
27
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facilebio/FacileAnalysis: Modularized and interactive analyses over a FacileDataStore
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API

API for facilebio/FacileAnalysis
Modularized and interactive analyses over a FacileDataStore

Global functions
.add_observation_weights Source code
.data_dge_feature Source code
.data_ttest_scatter Source code
.ffsea.iquadrants Source code
.ffsea_methods Source code
.filter_count_assay Source code
.filter_features Source code
.filter_zero_variance Source code
.fpca.feature_statistics Source code
.interaction_fdge Source code
.prefix_contrast Source code
.viz.FacileTtestAnalysisResult Source code
.viz.dge_ttest Source code
.viz.fpca Source code
.viz_dge_feature Source code
.viz_pca_scatter Source code
.viz_pca_scree Source code
.viz_ttest_scatter Source code
.voom Source code
.voomLmFit Source code
.voomWithQualityWeights Source code
.with_warnings Source code
FSEA Man page
GSEA Man page
GeneSetDb.FacileFeatureSignature Source code
biocbox.FacileDgeAnalysisResult Man page Source code
biocbox.FacileLinearModelDefinition Man page Source code
comparable Man page Source code
compare Man page Source code
compare.FacileAnalysisResult Source code
compare.FacilePcaAnalysisResult Man page Source code
compare.FacileTtestAnalysisResult Man page Source code
contrast Man page Source code
contrast.FacileDgeAnalysisResult Source code
contrast.FacileLinearModelDefinition Source code
contrast.NULL Source code
contrast.default Source code
default_ffsea_args Source code
default_ffsea_args.FacileAnovaAnalysisResult Source code
default_ffsea_args.FacilePcaAnalysisResult Source code
default_ffsea_args.FacileTtestAnalysisResult Source code
default_ffsea_args.default Source code
design Man page Source code
design.FacileDgeAnalysisResult Source code
design.FacileLinearModelDefinition Source code
design.NULL Source code
errors Man page Source code
example_aes_data_table Source code
expect_daes_map Source code
extract_feature_id Source code
faro Man page Source code
faro.FacileAnalysisResult Source code
faro.default Source code
fdebug Source code
fdge Man page Source code
fdge.FacileAnovaModelDefinition Man page Source code
fdge.FacileFailedModelDefinition Source code
fdge.FacileLinearModelDefinition Man page Source code
fdge.FacileTtestDGEModelDefinition Man page Source code
fdge_methods Man page Source code
fds.FacileAnalysisResult Source code
features Man page
features.FacileDgeAnalysisResult Source code
features.FacileFseaAnalysisResult Source code
features.FacilePcaAnalysisResult Source code
ferror Source code
ffatal Source code
ffsea Man page Source code
ffsea.FacileAnovaAnalysisResult Source code
ffsea.FacilePcaAnalysisResult Source code
ffsea.FacileTtestAnalysisResult Source code
ffsea.FacileTtestComparisonAnalysisResult Man page Source code
ffsea.FacileTtestDGEModelDefinition Source code
ffsea.data.frame Source code
ffsea_method_types Source code
ffsea_method_types.FacileAnovaAnalysisResult Source code
ffsea_method_types.FacilePcaAnalysisResult Source code
ffsea_method_types.FacileTtestAnalysisResult Source code
ffsea_method_types.default Source code
ffsea_methods Man page Source code
ffsea_methods.FacileAnalysisResult Source code
ffsea_methods.default Source code
finfo Source code
flm_def Man page Source code
flm_def.FacileDataStore Man page Source code
flm_def.data.frame Man page Source code
flm_def.facile_frame Man page Source code
flm_def.tbl Man page Source code
fload Man page Source code
flog Source code
format.FacileDgeAnalysisResult Source code
format.FacileFeatureRankings Source code
format.FacileFeatureSignature Source code
format.FacileFseaAnalysisResult Source code
format.FacileLinearModelDefinition Source code
format.FacilePcaAnalysisResult Source code
format.FacileTtestComparisonAnalysisResult Source code
formula.FacileLinearModelDefinition Source code
fpca Man page Source code
fpca.FacileDataStore Source code
fpca.facile_frame Man page Source code
fpca.matrix Source code
fsave Man page Source code
fsave.FacileAnalysisResult Source code
fsave.FacileDgeAnalysisResult Source code
fsea Man page
ftrace Source code
fwarn Source code
gsea Man page
is_anova Man page Source code
is_anova.default Source code
is_ttest Man page Source code
is_ttest.default Source code
label.FacileAnovaAnalysisResult Source code
label.FacileTtestAnalysisResult Source code
messages Man page Source code
model Man page Source code
model.FacileDgeAnalysisResult Source code
model.FacileTtestComparisonAnalysisResult Source code
model.NULL Source code
name.FacileAnovaAnalysisResult Source code
name.FacileTtestAnalysisResult Source code
organism.FacileAnalysisResult Source code
param Man page Source code
param.BiocBox Source code
param.FacileAnalysisResult Source code
plot_data Man page
print.FacileDgeAnalysisResult Source code
print.FacileFeatureRankings Source code
print.FacileFeatureSignature Source code
print.FacileFseaAnalysisResult Source code
print.FacileLinearModelDefinition Source code
print.FacilePcaAnalysisResult Source code
print.FacileTtestComparisonAnalysisResult Source code
ranks Man page Source code
ranks.FacileAnovaAnalysisResult Source code
ranks.FacileFseaAnalysisResult Source code
ranks.FacilePcaAnalysisResult Source code
ranks.FacileTtestAnalysisResult Source code
redo Man page Source code
redo.FacileLinearModelDefinition Source code
reexports Man page
refds Man page Source code
refds.FacileAnalysisResult Source code
refds.default Source code
refds.facile_frame Source code
refds.list Source code
report Man page Source code
report.FacilePcaAnalysisResult Source code
report.FacileTtestAnalysisResult Man page Source code
reqpkg Source code
result Source code
result.FacileAnalysisResult Source code
result.FacileDgeAnalysisResult Source code
result.FacileFeatureRanks Source code
result.FacileFeatureSetRanks Source code
result.FacileFeatureSignature Source code
result.FacileFseaAnalysisResult Man page Source code
result.FacileLinearModelDefinition Source code
result.FacileTtestComparisonAnalysisResult Source code
samples Man page
samples.FacileDgeAnalysisResult Source code
samples.FacileFseaAnalysisResult Source code
samples.FacileLinearModelDefinition Source code
samples.FacilePcaAnalysisResult Source code
samples.FacileTtestComparisonAnalysisResult Source code
samples.FacileTtestModelDefinition Source code
signature Man page Source code
signature.FacileAnovaAnalysisResult Source code
signature.FacileAnovaFeatureRanks Source code
signature.FacilePcaAnalysisResult Source code
signature.FacilePcaFeatureRanks Source code
signature.FacileTtestAnalysisResult Source code
signature.FacileTtestFeatureRanks Source code
signature.MultiDimRankings Source code
signed Man page Source code
signed.FacileFeatureRanks Source code
signed.FacileFeatureSignature Source code
status Man page Source code
status.FacileAnovaModelDefinition Source code
status.FacileFailedModelDefinition Source code
status.FacileInteractionTestModelDefinition Source code
status.FacileTtestModelDefinition Source code
status.default Source code
tidy Man page
tidy.FacileAnalysisResult Source code
tidy.FacileDgeAnalysisResult Source code
tidy.FacileFeatureRanks Source code
tidy.FacileFeatureSetRanks Source code
tidy.FacileFeatureSignature Source code
tidy.FacileFseaAnalysisResult Source code
tidy.FacilePcaComparisonAnalysisResult Source code
tidy.FacileTtestComparisonAnalysisResult Man page Source code
unfds Man page Source code
unfds.FacileAnalysisResult Source code
unfds.data.frame Source code
unfds.default Source code
unfds.list Source code
unfds.tbl Source code
viz Man page Source code Source code
viz.FacileAnovaAnalysisResult Source code
viz.FacileFseaAnalysisResult Source code
viz.FacilePcaAnalysisResult Source code
viz.FacileTtestAnalysisResult Source code
viz.FacileTtestComparisonAnalysisResult Source code
warnings Man page Source code
with_sample_covs Man page Source code
facilebio/FacileAnalysis documentation built on March 15, 2024, 7:37 a.m.

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