API for famuvie/breedR
Statistical Methods for Forest Genetic Resources Analysts
| Global functions | |
|---|---|
| $.metagene | Man page |
| $<-.metagene | Man page |
| Extract.metagene | Man page |
| [.metagene | Man page |
| `breedR.get.HOME` | Source code |
| `breedR.get.USER` | Source code |
| `breedR.get.breedREnv` | Source code |
| `breedR.os.32or64bit` | Source code |
| `breedR.os.is.32bit` | Source code |
| `breedR.os.is.64bit` | Source code |
| `breedR.os.type` | Source code |
| `breedR.os` | Source code |
| `breedR.qdel` | Source code |
| `breedR.qnuke` | Source code |
| `breedR.qstat` | Source code |
| additive_genetic | Man page Source code |
| additive_genetic_animal | Man page Source code |
| additive_genetic_competition | Man page Source code |
| all.equal.remlf90 | Source code |
| as.data.frame.metagene | Man page |
| as.data.frame.pedigree | Man page Source code |
| as.triplet | Man page Source code |
| b.values | Man page |
| bispline_incidence | Man page |
| breedR | Man page |
| breedR-package | Man page |
| breedR.bin.builtin | Source code |
| breedR.clean_vignettes | Source code |
| breedR.cygwin.check | Source code |
| breedR.cygwin.setPATH | Source code |
| breedR.deps_graph | Source code |
| breedR.download_bins | Source code |
| breedR.download_deps | Source code |
| breedR.get.HOME | Man page |
| breedR.get.USER | Man page |
| breedR.get.element | Source code |
| breedR.getOption | Man page Source code |
| breedR.is.element | Source code |
| breedR.move_vignettes | Source code |
| breedR.option | Man page |
| breedR.options | Man page |
| breedR.os | Man page |
| breedR.os.32or64bit | Man page |
| breedR.os.type | Man page |
| breedR.qdel | Man page |
| breedR.qget | Man page Source code |
| breedR.qnuke | Man page |
| breedR.qstat | Man page |
| breedR.remote | Man page Source code |
| breedR.remote_load | Man page Source code |
| breedR.result | Source code |
| breedR.sample.AR | Man page Source code |
| breedR.sample.BV | Man page Source code |
| breedR.sample.pedigree | Man page Source code |
| breedR.sample.phenotype | Man page Source code |
| breedR.sample.ranef | Man page Source code |
| breedR.sample.splines | Man page Source code |
| breedR.setOption | Man page Source code |
| breedR.ssh | Source code |
| breedR.ssh_params | Source code |
| breedR.submit | Source code |
| breedR.update_bins | Source code |
| breedR.update_drat | Source code |
| breedR.update_guides | Source code |
| breedR_deploy | Source code |
| breedR_newrelease | Source code |
| breedR_online | Source code |
| breedR_release | Source code |
| breedR_serve | Source code |
| breedr_ar | Man page |
| breedr_blocks | Man page |
| breedr_effect | Man page Source code |
| breedr_progsf90_repo | Man page Source code |
| breedr_splines | Man page Source code |
| build.AR.rho.grid | Source code |
| build.AR1d | Source code |
| build.mf | Source code |
| build.splines1d | Source code |
| build.splines1d.sparse | Source code |
| build_grid | Man page |
| build_pedigree | Man page Source code |
| changed_guides | Source code |
| check_generic | Source code |
| check_genetic | Source code |
| check_pedigree | Man page Source code |
| check_progsf90 | Man page Source code |
| check_spatial | Source code |
| check_var.ini | Man page |
| coef.remlf90 | Source code |
| compare.plots | Man page Source code |
| competition | Man page Source code |
| coordinates,breedR-method | Man page |
| coordinates,effect_group-method | Man page |
| coordinates,metagene-method | Man page |
| coordinates,spatial-method | Man page |
| coordinates<-,breedR-method | Man page |
| coordinates<-,metagene-method | Man page |
| coordinates_breedR | Man page |
| decompress | Source code |
| default_initial_variance | Man page Source code |
| determine.n.knots | Man page Source code |
| diagonal | Man page |
| dim.breedr_effect | Man page Source code |
| dim.effect_group | Man page Source code |
| distribute_knots_uniformgrid | Man page |
| douglas | Man page |
| effect_group | Man page Source code |
| effect_type | Man page Source code |
| effect_type.breedr_effect | Man page Source code |
| effect_type.effect_group | Man page Source code |
| extractAIC.remlf90 | Source code |
| extract_block | Man page Source code |
| fill_hole | Source code |
| fill_holes | Man page Source code |
| fixed | Man page |
| fixed.effects | Man page |
| fixef | Man page |
| fixef.breedR | Man page |
| fixef.remlf90 | Man page |
| generic | Man page Source code |
| genetic | Man page Source code |
| get_efnames | Man page Source code |
| get_estimates | Source code |
| get_ntraits | Man page Source code |
| get_ntraits.metagene | Man page |
| get_param | Man page Source code |
| get_param.breedr_modelframe | Man page Source code |
| get_param.effect_group | Man page Source code |
| get_param.remlf90 | Man page Source code |
| get_param.spatial | Man page Source code |
| get_pedigree | Man page Source code |
| get_pedigree.breedr_modelframe | Man page Source code |
| get_pedigree.effect_group | Man page Source code |
| get_pedigree.genetic | Man page Source code |
| get_pedigree.metagene | Man page Source code |
| get_pedigree.remlf90 | Man page Source code |
| get_structure | Man page Source code |
| get_structure.breedR | Man page |
| get_structure.breedr_effect | Man page Source code |
| get_structure.effect_group | Man page Source code |
| getdir | Source code |
| getrootdir | Source code |
| globulus | Man page |
| gmean | Source code |
| install_progsf90 | Man page Source code |
| is_numericlog | Man page Source code |
| larix | Man page |
| ldf2matrix | Source code |
| lmat2df | Source code |
| lme4_fml | Source code |
| loc_grid | Man page |
| m1 | Man page |
| m4 | Man page |
| matrix.short16 | Source code |
| metagene | Man page |
| model.matrix.ar | Source code |
| model.matrix.blocks | Source code |
| model.matrix.breedr_effect | Source code |
| model.matrix.effect_group | Source code |
| model.matrix.splines | Source code |
| my_unzip | Source code |
| names_effect | Source code |
| neighbours.at | Man page Source code |
| neighbours.at.list | Man page Source code |
| neighbours.at.matrix | Man page Source code |
| ngenerations | Man page Source code |
| ngenerations.metagene | Man page |
| nindividuals | Man page Source code |
| nindividuals.metagene | Man page |
| normalise_coordinates | Man page |
| parse.txtmat | Man page Source code |
| permanent_environmental_competition | Man page Source code |
| pf90_code_missing | Man page Source code |
| pf90_default_heritability | Man page |
| plot.metagene | Man page Source code |
| plot.ranef.breedR | Source code |
| plot.remlf90 | Man page |
| print.breedR.q | Man page Source code |
| print.breedR.variogram | Man page Source code |
| print.breedR_estimates | Source code |
| print.remlf90 | Source code |
| print.summary.metagene | Man page Source code |
| print.summary.remlf90 | Source code |
| progsf90 | Man page |
| progsf90_files | Source code |
| random | Man page |
| ranef | Man page |
| ranef.breedR | Man page |
| ranef.remlf90 | Man page |
| read.metagene | Man page Source code |
| remlf90 | Man page Source code |
| remote | Man page |
| renderpf90 | Man page Source code |
| renderpf90.additive_genetic_animal | Man page Source code |
| renderpf90.additive_genetic_competition | Man page Source code |
| renderpf90.ar | Man page Source code |
| renderpf90.blocks | Man page Source code |
| renderpf90.breedr_modelframe | Man page Source code |
| renderpf90.default | Man page Source code |
| renderpf90.diagonal | Man page Source code |
| renderpf90.effect_group | Man page Source code |
| renderpf90.fixed | Man page Source code |
| renderpf90.generic | Man page Source code |
| renderpf90.matrix | Man page Source code |
| renderpf90.permanent_environmental_competition | Man page Source code |
| renderpf90.splines | Man page Source code |
| retrieve_bin | Source code |
| retrieve_remote | Man page |
| sim.spatial | Man page Source code |
| simulation | Man page |
| spatial | Man page Source code |
| spatial.plot | Man page Source code |
| splat | Man page |
| submit | Man page |
| summary.breedR.q | Man page Source code |
| summary.metagene | Man page Source code |
| summary.remlf90 | Source code |
| validate_generic_element | Source code |
| validate_variance | Man page |
| variogram | Man page Source code |
| vcnames | Source code |
| vcov.random | Source code |
| vcov.remlf90 | Man page |
| vgram.matrix | Man page Source code |
| winssh_sanitize | Source code |
