API for famuvie/breedR
Statistical Methods for Forest Genetic Resources Analysts

Global functions
$.metagene Man page
$<-.metagene Man page
Extract.metagene Man page
[.metagene Man page
additive_genetic Man page Source code
additive_genetic_animal Man page Source code
additive_genetic_competition Man page Source code
all.equal.remlf90 Source code
as.data.frame.metagene Man page Source code
as.data.frame.pedigree Man page Source code
as.triplet Man page Source code
b.values Man page Source code
bispline_incidence Man page Source code
breedR Man page
breedR-package Man page
breedR.bin.builtin Source code
breedR.build_vignettes Source code
breedR.clean_vignettes Source code
breedR.cygwin.check Source code
breedR.cygwin.setPATH Source code
breedR.deps_graph Source code
breedR.download_bins Source code
breedR.download_deps Source code
breedR.get.HOME Man page
breedR.get.USER Man page
breedR.get.element Source code
breedR.getOption Man page Source code
breedR.is.element Source code
breedR.move_vignettes Source code
breedR.option Man page
breedR.options Man page
breedR.os Man page
breedR.os.32or64bit Man page
breedR.os.type Man page
breedR.qdel Man page Man page
breedR.qget Man page Source code
breedR.qnuke Man page Man page
breedR.qstat Man page Man page
breedR.remote Man page Source code
breedR.remote_load Man page Man page Source code
breedR.result Source code
breedR.sample.AR Man page Source code
breedR.sample.BV Man page Source code
breedR.sample.pedigree Man page Source code
breedR.sample.phenotype Man page Source code
breedR.sample.ranef Man page Source code
breedR.sample.splines Man page Source code
breedR.setOption Man page Man page Source code
breedR.ssh Source code
breedR.ssh_params Source code
breedR.submit Source code
breedR.update_bins Source code
breedR.update_drat Source code
breedR.update_guides Source code
breedR_build_win Source code
breedR_deploy Source code
breedR_online Source code
breedR_release Source code
breedR_serve Source code
breedR_spellcheck Source code
breedr_ar Man page Source code
breedr_blocks Man page Source code
breedr_effect Man page Source code
breedr_progsf90_repo Man page Source code
breedr_splines Man page Source code
build.AR.rho.grid Source code
build.AR1d Source code
build.effects Source code
build.mf Source code
build.splines1d Source code
build.splines1d.sparse Source code
build_grid Man page Source code
build_pedigree Man page Source code
changed_guides Source code
check_generic Source code
check_genetic Source code
check_pedigree Man page Source code
check_progsf90 Man page Source code
check_spatial Source code
check_var.ini Man page Source code
coef.remlf90 Source code
compare.plots Man page Source code
competition Man page Source code
coordinates,breedR-method Man page
coordinates,effect_group-method Man page
coordinates,metagene-method Man page
coordinates,spatial-method Man page
coordinates<-,breedR-method Man page
coordinates<-,metagene-method Man page
coordinates_breedR Man page
decompress Source code
default_initial_variance Man page Source code
determine.n.knots Man page Source code
diagonal Man page Source code
dim.breedr_effect Man page Source code
dim.effect_group Man page Source code
distribute_knots_uniformgrid Man page Source code
douglas Man page
download_rhub Source code
download_winbuilder Source code
effect_group Man page Source code
effect_type Man page Source code
effect_type.breedr_effect Man page Source code
effect_type.effect_group Man page Source code
extractAIC.remlf90 Source code
fill_hole Source code
fill_holes Man page Source code
fitted.remlf90 Source code
fixed Man page Source code
fixed.effects Man page
fixef Man page
fixef.breedR Man page
fixef.remlf90 Man page Source code
generic Man page Source code
genetic Man page Source code
get_efnames Man page Source code
get_estimates Source code
get_ntraits Man page Source code
get_ntraits.metagene Man page Source code
get_param Man page Source code
get_param.breedr_modelframe Man page Source code
get_param.effect_group Man page Source code
get_param.remlf90 Man page Source code
get_param.spatial Man page Source code
get_pedigree Man page Source code
get_pedigree.breedr_modelframe Man page Source code
get_pedigree.effect_group Man page Source code
get_pedigree.genetic Man page Source code
get_pedigree.metagene Man page Source code
get_pedigree.remlf90 Man page Source code
get_structure Man page Source code
get_structure.breedR Man page Source code
get_structure.breedr_effect Man page Source code
get_structure.effect_group Man page Source code
getdir Source code
getrootdir Source code
globulus Man page
gmean Source code
install_progsf90 Man page Source code
larix Man page
ldf2matrix Source code
lmat2df Source code
lme4_fml Source code
loc_grid Man page Source code
logLik.remlf90 Source code
m1 Man page
m4 Man page
matrix.short16 Source code
metagene Man page
model.frame.remlf90 Source code
model.matrix.ar Source code
model.matrix.blocks Source code
model.matrix.breedr_effect Source code
model.matrix.effect_group Source code
model.matrix.remlf90 Source code
model.matrix.splines Source code
my_unzip Source code
names_effect Source code
neighbours.at Man page Source code
neighbours.at.list Man page Source code
neighbours.at.matrix Man page Source code
ngenerations Man page Source code
ngenerations.metagene Man page Source code
nindividuals Man page Source code
nindividuals.metagene Man page Source code
nobs.remlf90 Source code
normalise_coordinates Man page Source code
parse.txtmat Man page Source code
parse_results Source code
permanent_environmental_competition Man page Source code
pf90_code_missing Man page Source code
pf90_default_heritability Man page Source code
plot.metagene Man page Source code
plot.ranef.breedR Source code
plot.remlf90 Man page Source code
print.breedR.q Man page Source code
print.breedR.variogram Man page Source code
print.breedR_estimates Source code
print.remlf90 Source code
print.spellcheck Source code
print.summary.metagene Man page Source code
print.summary.remlf90 Source code
progsf90 Man page Source code
progsf90_files Source code
random Man page Source code
ranef Man page
ranef.breedR Man page
ranef.remlf90 Man page Source code
read.metagene Man page Source code
remlf90 Man page Source code
remote Man page
renderpf90 Man page Source code
renderpf90.additive_genetic_animal Man page Source code
renderpf90.additive_genetic_competition Man page Source code
renderpf90.ar Man page Source code
renderpf90.blocks Man page Source code
renderpf90.breedr_modelframe Man page Source code
renderpf90.default Man page Source code
renderpf90.diagonal Man page Source code
renderpf90.effect_group Man page Source code
renderpf90.fixed Man page Source code
renderpf90.generic Man page Source code
renderpf90.matrix Man page Source code
renderpf90.permanent_environmental_competition Man page Source code
renderpf90.splines Man page Source code
residuals.remlf90 Source code
retrieve_bin Source code
retrieve_remote Man page Source code
sim.spatial Man page Source code
sim.spatial.metagene Source code
simulation Man page
spatial Man page Source code
spatial.plot Man page Source code
spell_check Source code
spell_check_file Source code
spell_check_rd Source code
spell_check_text Source code
splat Man page Source code
submit Man page
summary.breedR.q Man page Source code
summary.metagene Man page Source code
summary.remlf90 Source code
validate_generic_element Source code
validate_variance Man page Source code
variogram Man page Source code
vcnames Source code
vcov.random Source code
vcov.remlf90 Man page Source code
vgram.matrix Man page Source code
winssh_sanitize Source code
write.progsf90 Source code
famuvie/breedR documentation built on Oct. 13, 2017, 5:41 p.m.