README.md
In fawda123/fastablast: Functions for Mothur Fasta Files and Blast
fastablast: functions for Mothur fasta files and BLAST
Marcus W. Beck, beck.marcus@epa.gov
This is the development repository for the fastablast package. Functions within this package can be used to format Mothur fasta files for use with Blast and retrieval of information from Blast output files.
Installing the package
The development version of this package can be installed as follows:
install.packages('devtools')
library(devtools)
install_github('fawda123/fastablast')
library(fastablast)
Using the functions
Format a fasta file for BLAST with formfst:
# path to input file
flin <- 'inst/fst_ex.fasta'
# execute
formfst(flin)
## [1] ">Otu000001"
## [2] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CA--C-CT-AC-CG-A-TT--GAA-T-GG-TC-CG-G--T-GA--A--G-A-CT--C--G-G-G-A------T-T-GT-G-AG----------TG--TT------G---CC-----T--------------------------------------------T-CA-C------------------------------------------T---G--G-T--G--AT-G----------------------------------------T--T--T-GC--A--A----GA-A--C--------T--T-G-T--C--TA--A-A--C-C----T-T--A-T-CA-TT-T---AG-A-GG-A-A---GG-TG"
## [3] ">Otu000002"
## [4] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--A-TT-AC-CG-A--C--GAA-T-TA-TT-TA-G--T-GA--G--A-T-CT--C--T-G-G-AG-----G-T-GA-A-CA----------CG--AC------GG--TG-----TT-------------------------------------------T-CG-G-----------------------------------------CA---C--TGTT-G--TT-G----------------------------------------C--T--T-CG--C--C----AA-A--G--------T--T-G-A--T--CA--A-A--C-T----T-G--A-T-GA-TT-T---GG-A-GG-A-A---AT-AA"
## [5] ">Otu000003"
## [6] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--T-TT-AC-CG-A-TT--GAG-T-GT-TC-AG-G--T-GA--G--T-C-TT--C--T-T-G-A------T-A-GT-T---------------------------------------------------------------------------------G-CA-A-----------------------------------------------------------------------------------------------------------A-AT--T--A----AA-A--A--------T--T-A-A--A--CA--A-A--C-C----T-T--A-G-CA-CT-T---AG-A-GG-A-A---AA-AG"
## [7] ">Otu000004"
## [8] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--C-CT-AC-CG-A-TT--GGG-T-GT-GC-TG-G--T-GA--A--G-T-GT--T--C-G-G-A------T-T-GG-A-GG----------CGT-GC------TG--GT-----G--------------------------------------------G-TT-C------------------------------------------C---A--CTA--G--CC-G----------------------------------------C--T--T-TC--G--A----GA-A--G--------T--T-C-A--T--TA--A-A--C-C----C-T--C-C-CA-CC-T---AG-A-GG-A-A---GG-AG"
## [9] ">Otu000005"
## [10] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CA--C-CT-AC-CG-A-TT--GAA-T-GG-TC-CG-G--T-GA--A--G-C-CT--C--G-G-G-A------T-T-GT-G-AC----------GA--TT------TC--CC-----T--------------------------------------------T-TA-T------------------------------------------T---G--GGA--G--GT-T----------------------------------------G--T--T-GC--G--A----GA-A--C--------T--T-G-T--C--TA--A-A--C-C----T-T--A-T-CA-TT-T---AG-A-GG-A-A---GG-TG"
Save the file:
# file name
flout <- 'out.txt'
# execute
formfst(flin, flout)
Retrieve relevant info from BLAST file with formbls:
# path to input file
flin <- 'inst/bls_ex.txt'
# execute
formbls(flin)
## otu sequence
## 1 Otu000001 LC037442.1
## 2 Otu000001 KJ961664.1
## 3 Otu000001 KJ961663.1
## 4 Otu000001 KJ011666.1
## 5 Otu000001 KJ011665.1
## 6 Otu000001 KJ011659.1
## 7 Otu000001 KJ011658.1
## 8 Otu000001 KJ011655.1
## 9 Otu000001 KJ011654.1
## 10 Otu000001 KJ011653.1
## 11 Otu000002 AB704954.1
## 12 Otu000002 KC177280.1
## 13 Otu000002 X99212.1
## 14 Otu000002 AY821866.1
## 15 Otu000002 AJ586561.1
## 16 Otu000002 AB704953.1
## 17 Otu000002 LN833602.1
## 18 Otu000002 AB704950.1
## 19 Otu000002 AB704948.1
## 20 Otu000002 AB704958.1
## 21 Otu000003 KF524419.1
## 22 Otu000003 KF524413.1
## 23 Otu000003 KF524385.1
## 24 Otu000003 KF524384.1
## 25 Otu000003 KF524376.1
## 26 Otu000003 GU187050.1
## 27 Otu000003 GU586185.1
## 28 Otu000003 AF401526.1
## 29 Otu000003 AF429894.1
## 30 Otu000003 KF524417.1
## 31 Otu000004 KM020182.1
## 32 Otu000004 KM020163.1
## 33 Otu000004 KM020160.1
## 34 Otu000004 FN824399.1
## 35 Otu000004 AF182820.1
## 36 Otu000004 FN824398.1
## 37 Otu000004 KC145436.1
## 38 Otu000004 FN824397.1
## 39 Otu000004 EF024750.1
## 40 Otu000004 EF024307.1
## 41 Otu000005 KJ961709.1
## 42 Otu000005 KJ961707.1
## 43 Otu000005 KJ961706.1
## 44 Otu000005 KJ961699.1
## 45 Otu000005 KJ961698.1
## 46 Otu000005 KJ961695.1
## 47 Otu000005 KJ961693.1
## 48 Otu000005 KJ961692.1
## 49 Otu000005 KJ961691.1
## 50 Otu000005 KJ961688.1
## descrip score_bits
## 1 Gomphonema parvulum gene for 18S ribosomal RNA, pa... 226
## 2 Gomphonema sp. 117 18S ribosomal RNA gene, partial... 226
## 3 Gomphonema sp. 12 18S ribosomal RNA gene, partial ... 226
## 4 Gomphonema subclavatum strain FD108 18S ribosomal ... 226
## 5 Gomphonema subclavatum strain FD98 18S ribosomal R... 226
## 6 Gomphonema parvulum strain FD240 18S ribosomal RNA... 226
## 7 Gomphonema intricatum strain FD383 18S ribosomal R... 226
## 8 Gomphonema dichotomum strain FD288 18S ribosomal R... 226
## 9 Gomphonema carolinense strain FD285 18S ribosomal ... 226
## 10 Gomphonema brebissonii strain FD373 18S ribosomal ... 226
## 11 Tanytarsus sp. ent10 genes for 18S rRNA, ITS1 and ... 193
## 12 Chironomus tepperi 18S ribosomal RNA gene, partial... 158
## 13 Chironomus tentans partial 18S rRNA gene, 5.8S rRNA ... 158
## 14 Dicrotendipes fumidus 18S ribosomal RNA gene, part... 152
## 15 Acricotopus lucens partial 18S rRNA gene, clone Al... 152
## 16 Polypedilum tamanigrum genes for 18S rRNA, ITS1 an... 137
## 17 Clunio marinus genomic DNA sequence contains 18S r... 132
## 18 Polypedilum cultellatum genes for 18S rRNA, ITS1 a... 132
## 19 Paraborniella tonnoiri genes for 18S rRNA, ITS1 an... 126
## 20 Paratanytarsus grimmii genes for 18S rRNA, ITS1 an... 124
## 21 Vorticella campanula isolate Whpop4 18S ribosomal ... 189
## 22 Vorticella cf. campanula isolate Dupop 18S ribosom... 189
## 23 Vorticella campanula isolate Qdpop2 18S ribosomal ... 189
## 24 Vorticella campanula isolate Qdpop1 18S ribosomal ... 189
## 25 Vorticella campanula isolate Gepop 18S ribosomal R... 189
## 26 Vorticella sp. SP-2009-3 18S ribosomal RNA gene, p... 189
## 27 Vorticella sp. 18 PPS-2010 18S ribosomal RNA gene,... 189
## 28 Ophrydium versatile small subunit ribosomal RNA ge... 189
## 29 Ophrydium versatile 18S ribosomal RNA gene, partia... 189
## 30 Vorticella campanula isolate Qdpop3 18S ribosomal ... 183
## 31 Schizomeris leibleinii strain SAG 42.96 18S riboso... 215
## 32 Schizomeris leibleinii strain SAG 44.84 18S riboso... 215
## 33 Schizomeris leibleinii strain SAG 24.88 18S riboso... 215
## 34 Schizomeris leibleinii partial 18S rRNA gene, cult... 215
## 35 Schizomeris leibleinii strain UTEXLB1228 18S ribos... 196
## 36 Aphanochaete elegans partial 18S rRNA gene, cultur... 176
## 37 Sphaeropleales sp. KF-2013d strain SAG 2265 18S ri... 171
## 38 Aphanochaete repens partial 18S rRNA gene, culture... 171
## 39 Eimeriidae environmental sample clone Elev_18S_124... 171
## 40 Eimeriidae environmental sample clone Elev_18S_713... 171
## 41 Eunotia sp. 63 18S ribosomal RNA gene, partial seq... 230
## 42 Eunotia sp. 62 18S ribosomal RNA gene, partial seq... 230
## 43 Eunotia sp. 60 18S ribosomal RNA gene, partial seq... 230
## 44 Eunotia sp. 30 18S ribosomal RNA gene, partial seq... 230
## 45 Eunotia sp. 11 18S ribosomal RNA gene, partial seq... 230
## 46 Eunotia sp. 18 18S ribosomal RNA gene, partial seq... 230
## 47 Eunotia sp. 56 18S ribosomal RNA gene, partial seq... 230
## 48 Eunotia sp. 116 18S ribosomal RNA gene, partial se... 230
## 49 Eunotia sp. 28 18S ribosomal RNA gene, partial seq... 230
## 50 Eunotia sp. 5 LKM-2015 18S ribosomal RNA gene, par... 230
## e_value identities gaps
## 1 9e-56 122/122 0/122
## 2 9e-56 122/122 0/122
## 3 9e-56 122/122 0/122
## 4 9e-56 122/122 0/122
## 5 9e-56 122/122 0/122
## 6 9e-56 122/122 0/122
## 7 9e-56 122/122 0/122
## 8 9e-56 122/122 0/122
## 9 9e-56 122/122 0/122
## 10 9e-56 122/122 0/122
## 11 9e-46 104/104 0/104
## 12 3e-35 114/128 1/128
## 13 3e-35 114/128 1/128
## 14 2e-33 114/129 3/129
## 15 2e-33 113/128 1/128
## 16 4e-29 95/105 1/105
## 17 2e-27 110/129 2/129
## 18 2e-27 93/104 0/104
## 19 1e-25 94/106 3/106
## 20 3e-25 82/89 2/89
## 21 1e-44 102/102 0/102
## 22 1e-44 102/102 0/102
## 23 1e-44 102/102 0/102
## 24 1e-44 102/102 0/102
## 25 1e-44 102/102 0/102
## 26 1e-44 102/102 0/102
## 27 1e-44 102/102 0/102
## 28 1e-44 102/102 0/102
## 29 1e-44 102/102 0/102
## 30 6e-43 101/102 0/102
## 31 2e-52 122/125 0/125
## 32 2e-52 122/125 0/125
## 33 2e-52 122/125 0/125
## 34 2e-52 122/125 0/125
## 35 7e-47 106/106 0/106
## 36 9e-41 117/127 4/127
## 37 4e-39 116/127 4/127
## 38 4e-39 115/126 2/126
## 39 4e-39 115/126 2/126
## 40 4e-39 115/126 2/126
## 41 7e-57 124/124 0/124
## 42 7e-57 124/124 0/124
## 43 7e-57 124/124 0/124
## 44 7e-57 124/124 0/124
## 45 7e-57 124/124 0/124
## 46 7e-57 124/124 0/124
## 47 7e-57 124/124 0/124
## 48 7e-57 124/124 0/124
## 49 7e-57 124/124 0/124
## 50 7e-57 124/124 0/124
Save the file:
# file name
flout <- 'out.txt'
# execute
formbls(flin, flout)
fawda123/fastablast documentation built on May 6, 2019, 10:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
fastablast: functions for Mothur fasta files and BLAST
Marcus W. Beck, beck.marcus@epa.gov
This is the development repository for the fastablast package. Functions within this package can be used to format Mothur fasta files for use with Blast and retrieval of information from Blast output files.
Installing the package
The development version of this package can be installed as follows:
install.packages('devtools')
library(devtools)
install_github('fawda123/fastablast')
library(fastablast)
Using the functions
Format a fasta file for BLAST with formfst:
# path to input file
flin <- 'inst/fst_ex.fasta'
# execute
formfst(flin)
## [1] ">Otu000001"
## [2] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CA--C-CT-AC-CG-A-TT--GAA-T-GG-TC-CG-G--T-GA--A--G-A-CT--C--G-G-G-A------T-T-GT-G-AG----------TG--TT------G---CC-----T--------------------------------------------T-CA-C------------------------------------------T---G--G-T--G--AT-G----------------------------------------T--T--T-GC--A--A----GA-A--C--------T--T-G-T--C--TA--A-A--C-C----T-T--A-T-CA-TT-T---AG-A-GG-A-A---GG-TG"
## [3] ">Otu000002"
## [4] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--A-TT-AC-CG-A--C--GAA-T-TA-TT-TA-G--T-GA--G--A-T-CT--C--T-G-G-AG-----G-T-GA-A-CA----------CG--AC------GG--TG-----TT-------------------------------------------T-CG-G-----------------------------------------CA---C--TGTT-G--TT-G----------------------------------------C--T--T-CG--C--C----AA-A--G--------T--T-G-A--T--CA--A-A--C-T----T-G--A-T-GA-TT-T---GG-A-GG-A-A---AT-AA"
## [5] ">Otu000003"
## [6] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--T-TT-AC-CG-A-TT--GAG-T-GT-TC-AG-G--T-GA--G--T-C-TT--C--T-T-G-A------T-A-GT-T---------------------------------------------------------------------------------G-CA-A-----------------------------------------------------------------------------------------------------------A-AT--T--A----AA-A--A--------T--T-A-A--A--CA--A-A--C-C----T-T--A-G-CA-CT-T---AG-A-GG-A-A---AA-AG"
## [7] ">Otu000004"
## [8] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CT--C-CT-AC-CG-A-TT--GGG-T-GT-GC-TG-G--T-GA--A--G-T-GT--T--C-G-G-A------T-T-GG-A-GG----------CGT-GC------TG--GT-----G--------------------------------------------G-TT-C------------------------------------------C---A--CTA--G--CC-G----------------------------------------C--T--T-TC--G--A----GA-A--G--------T--T-C-A--T--TA--A-A--C-C----C-T--C-C-CA-CC-T---AG-A-GG-A-A---GG-AG"
## [9] ">Otu000005"
## [10] "GG-T-A----C-ACA-C-C-G-C-CC--GT-C---G---CA--C-CT-AC-CG-A-TT--GAA-T-GG-TC-CG-G--T-GA--A--G-C-CT--C--G-G-G-A------T-T-GT-G-AC----------GA--TT------TC--CC-----T--------------------------------------------T-TA-T------------------------------------------T---G--GGA--G--GT-T----------------------------------------G--T--T-GC--G--A----GA-A--C--------T--T-G-T--C--TA--A-A--C-C----T-T--A-T-CA-TT-T---AG-A-GG-A-A---GG-TG"
Save the file:
# file name
flout <- 'out.txt'
# execute
formfst(flin, flout)
Retrieve relevant info from BLAST file with formbls:
# path to input file
flin <- 'inst/bls_ex.txt'
# execute
formbls(flin)
## otu sequence
## 1 Otu000001 LC037442.1
## 2 Otu000001 KJ961664.1
## 3 Otu000001 KJ961663.1
## 4 Otu000001 KJ011666.1
## 5 Otu000001 KJ011665.1
## 6 Otu000001 KJ011659.1
## 7 Otu000001 KJ011658.1
## 8 Otu000001 KJ011655.1
## 9 Otu000001 KJ011654.1
## 10 Otu000001 KJ011653.1
## 11 Otu000002 AB704954.1
## 12 Otu000002 KC177280.1
## 13 Otu000002 X99212.1
## 14 Otu000002 AY821866.1
## 15 Otu000002 AJ586561.1
## 16 Otu000002 AB704953.1
## 17 Otu000002 LN833602.1
## 18 Otu000002 AB704950.1
## 19 Otu000002 AB704948.1
## 20 Otu000002 AB704958.1
## 21 Otu000003 KF524419.1
## 22 Otu000003 KF524413.1
## 23 Otu000003 KF524385.1
## 24 Otu000003 KF524384.1
## 25 Otu000003 KF524376.1
## 26 Otu000003 GU187050.1
## 27 Otu000003 GU586185.1
## 28 Otu000003 AF401526.1
## 29 Otu000003 AF429894.1
## 30 Otu000003 KF524417.1
## 31 Otu000004 KM020182.1
## 32 Otu000004 KM020163.1
## 33 Otu000004 KM020160.1
## 34 Otu000004 FN824399.1
## 35 Otu000004 AF182820.1
## 36 Otu000004 FN824398.1
## 37 Otu000004 KC145436.1
## 38 Otu000004 FN824397.1
## 39 Otu000004 EF024750.1
## 40 Otu000004 EF024307.1
## 41 Otu000005 KJ961709.1
## 42 Otu000005 KJ961707.1
## 43 Otu000005 KJ961706.1
## 44 Otu000005 KJ961699.1
## 45 Otu000005 KJ961698.1
## 46 Otu000005 KJ961695.1
## 47 Otu000005 KJ961693.1
## 48 Otu000005 KJ961692.1
## 49 Otu000005 KJ961691.1
## 50 Otu000005 KJ961688.1
## descrip score_bits
## 1 Gomphonema parvulum gene for 18S ribosomal RNA, pa... 226
## 2 Gomphonema sp. 117 18S ribosomal RNA gene, partial... 226
## 3 Gomphonema sp. 12 18S ribosomal RNA gene, partial ... 226
## 4 Gomphonema subclavatum strain FD108 18S ribosomal ... 226
## 5 Gomphonema subclavatum strain FD98 18S ribosomal R... 226
## 6 Gomphonema parvulum strain FD240 18S ribosomal RNA... 226
## 7 Gomphonema intricatum strain FD383 18S ribosomal R... 226
## 8 Gomphonema dichotomum strain FD288 18S ribosomal R... 226
## 9 Gomphonema carolinense strain FD285 18S ribosomal ... 226
## 10 Gomphonema brebissonii strain FD373 18S ribosomal ... 226
## 11 Tanytarsus sp. ent10 genes for 18S rRNA, ITS1 and ... 193
## 12 Chironomus tepperi 18S ribosomal RNA gene, partial... 158
## 13 Chironomus tentans partial 18S rRNA gene, 5.8S rRNA ... 158
## 14 Dicrotendipes fumidus 18S ribosomal RNA gene, part... 152
## 15 Acricotopus lucens partial 18S rRNA gene, clone Al... 152
## 16 Polypedilum tamanigrum genes for 18S rRNA, ITS1 an... 137
## 17 Clunio marinus genomic DNA sequence contains 18S r... 132
## 18 Polypedilum cultellatum genes for 18S rRNA, ITS1 a... 132
## 19 Paraborniella tonnoiri genes for 18S rRNA, ITS1 an... 126
## 20 Paratanytarsus grimmii genes for 18S rRNA, ITS1 an... 124
## 21 Vorticella campanula isolate Whpop4 18S ribosomal ... 189
## 22 Vorticella cf. campanula isolate Dupop 18S ribosom... 189
## 23 Vorticella campanula isolate Qdpop2 18S ribosomal ... 189
## 24 Vorticella campanula isolate Qdpop1 18S ribosomal ... 189
## 25 Vorticella campanula isolate Gepop 18S ribosomal R... 189
## 26 Vorticella sp. SP-2009-3 18S ribosomal RNA gene, p... 189
## 27 Vorticella sp. 18 PPS-2010 18S ribosomal RNA gene,... 189
## 28 Ophrydium versatile small subunit ribosomal RNA ge... 189
## 29 Ophrydium versatile 18S ribosomal RNA gene, partia... 189
## 30 Vorticella campanula isolate Qdpop3 18S ribosomal ... 183
## 31 Schizomeris leibleinii strain SAG 42.96 18S riboso... 215
## 32 Schizomeris leibleinii strain SAG 44.84 18S riboso... 215
## 33 Schizomeris leibleinii strain SAG 24.88 18S riboso... 215
## 34 Schizomeris leibleinii partial 18S rRNA gene, cult... 215
## 35 Schizomeris leibleinii strain UTEXLB1228 18S ribos... 196
## 36 Aphanochaete elegans partial 18S rRNA gene, cultur... 176
## 37 Sphaeropleales sp. KF-2013d strain SAG 2265 18S ri... 171
## 38 Aphanochaete repens partial 18S rRNA gene, culture... 171
## 39 Eimeriidae environmental sample clone Elev_18S_124... 171
## 40 Eimeriidae environmental sample clone Elev_18S_713... 171
## 41 Eunotia sp. 63 18S ribosomal RNA gene, partial seq... 230
## 42 Eunotia sp. 62 18S ribosomal RNA gene, partial seq... 230
## 43 Eunotia sp. 60 18S ribosomal RNA gene, partial seq... 230
## 44 Eunotia sp. 30 18S ribosomal RNA gene, partial seq... 230
## 45 Eunotia sp. 11 18S ribosomal RNA gene, partial seq... 230
## 46 Eunotia sp. 18 18S ribosomal RNA gene, partial seq... 230
## 47 Eunotia sp. 56 18S ribosomal RNA gene, partial seq... 230
## 48 Eunotia sp. 116 18S ribosomal RNA gene, partial se... 230
## 49 Eunotia sp. 28 18S ribosomal RNA gene, partial seq... 230
## 50 Eunotia sp. 5 LKM-2015 18S ribosomal RNA gene, par... 230
## e_value identities gaps
## 1 9e-56 122/122 0/122
## 2 9e-56 122/122 0/122
## 3 9e-56 122/122 0/122
## 4 9e-56 122/122 0/122
## 5 9e-56 122/122 0/122
## 6 9e-56 122/122 0/122
## 7 9e-56 122/122 0/122
## 8 9e-56 122/122 0/122
## 9 9e-56 122/122 0/122
## 10 9e-56 122/122 0/122
## 11 9e-46 104/104 0/104
## 12 3e-35 114/128 1/128
## 13 3e-35 114/128 1/128
## 14 2e-33 114/129 3/129
## 15 2e-33 113/128 1/128
## 16 4e-29 95/105 1/105
## 17 2e-27 110/129 2/129
## 18 2e-27 93/104 0/104
## 19 1e-25 94/106 3/106
## 20 3e-25 82/89 2/89
## 21 1e-44 102/102 0/102
## 22 1e-44 102/102 0/102
## 23 1e-44 102/102 0/102
## 24 1e-44 102/102 0/102
## 25 1e-44 102/102 0/102
## 26 1e-44 102/102 0/102
## 27 1e-44 102/102 0/102
## 28 1e-44 102/102 0/102
## 29 1e-44 102/102 0/102
## 30 6e-43 101/102 0/102
## 31 2e-52 122/125 0/125
## 32 2e-52 122/125 0/125
## 33 2e-52 122/125 0/125
## 34 2e-52 122/125 0/125
## 35 7e-47 106/106 0/106
## 36 9e-41 117/127 4/127
## 37 4e-39 116/127 4/127
## 38 4e-39 115/126 2/126
## 39 4e-39 115/126 2/126
## 40 4e-39 115/126 2/126
## 41 7e-57 124/124 0/124
## 42 7e-57 124/124 0/124
## 43 7e-57 124/124 0/124
## 44 7e-57 124/124 0/124
## 45 7e-57 124/124 0/124
## 46 7e-57 124/124 0/124
## 47 7e-57 124/124 0/124
## 48 7e-57 124/124 0/124
## 49 7e-57 124/124 0/124
## 50 7e-57 124/124 0/124
Save the file:
# file name
flout <- 'out.txt'
# execute
formbls(flin, flout)
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