API for fbreitwieser/pavian
Visualize and analyze metagenomics classification results

Global functions
REPORTATTR Source code
alignmentModule Man page Source code
alignmentModuleUI Man page Source code
assayData Source code
assayData.merged_reports Source code
assert Source code
beautify_colnames Man page Source code
beautify_string Source code
beautify_taxLineage Source code
build_kraken_tree Source code
build_sankey_network Source code
calc_robust_zscore Source code
collapse.taxRanks Source code
combine_df Source code
common_buttons Source code
comparisonModule Man page Source code
comparisonModuleUI Man page Source code
comparisonModuleUI_function Source code
dashboardUI Man page Source code
dataInputModule Man page Source code
dataInputModuleUI Man page Source code
dedupe Source code
delete_taxRanks_below Source code
dmessage Source code
dropdown_options Source code
exampleDataPanel Source code
extract_from_report Source code
f2si2 Source code
figure_options Source code
filter_cladeReads Man page Source code
filter_reports_to_taxRank Source code
filter_taxa Man page Source code
filter_taxon Man page Source code
formatSummaryDT Source code
get_bam2 Source code
get_col Source code
get_combinations Source code
get_directory_listing Source code
get_dt_container Source code
get_nreads Man page Source code
get_pileup Man page Source code
get_sample_name Source code
get_seqlengths Man page Source code
humanreadable Man page Source code
info_message Source code
list_kraken_files Source code
load_or_create Man page Source code
log_data_cols Source code
merge_reports Man page Source code
merge_reports2 Man page Source code
my_gg_theme Source code
na0 Source code
navbarpageUI Source code
normalize Man page Source code
normalize_data_cols Source code
now Source code
one_df Source code
pavianServer Man page Source code
plot_pileup Man page Source code
rbind_w_common_columns Source code
read_report Man page Source code
read_report2 Man page Source code
read_reports Man page Source code
read_sample_data Man page Source code
read_server_directory1 Man page Source code
reportOverviewModule Man page Source code
reportOverviewModuleUI Man page Source code
reportOverviewModuleUI_function Source code
req_attr Source code
robust_zscore Man page Source code
runApp Man page Source code
sampleModule Man page Source code
sampleModuleUI Man page Source code
sampleModuleUI_function Source code
serverDataPanel Source code
shinyTryCatch Source code
startsWith Source code
styleColorBar2 Source code
summarize_report Man page Source code
summarize_reports Man page Source code
text_representation Source code
uploadFilePanel Source code
withProgress1 Source code
withProgress_ns Source code
zero_if_na Man page Source code
zero_if_na1 Source code
fbreitwieser/pavian documentation built on Oct. 15, 2018, 11:06 a.m.