assay_tekcorrset: Access genes and transposable elements expression data

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

Access genes and transposable elements expression data

Description

a function only used for accessing the expression data from a TekCorrSet class object to demonstrate examples in vignettes. demonstration.

Usage

assay_tekcorrset(tecorrset, expType, sample)

Arguments

tecorrset	TekCorrSet object
expType	Indicate which data you want to access. It should be "gene" or "te".
sample	The species name or experimental design. It should be "human" and "chimpanzee" when you are running comparing species design. "control" and "treatment" are for running same species design.

Value

a dataframe contains expression genes or transposable elements.

Examples

data(speciesCorr)
hmGeneCorrInput <- assay_tekcorrset(speciesCorr, "gene", "human")
hmTECorrInput <- assay_tekcorrset(speciesCorr, "te", "human")
chimpGeneCorrInput <- assay_tekcorrset(speciesCorr, "gene", "chimpanzee")
chimpTECorrInput <- assay_tekcorrset(speciesCorr, "te", "chimpanzee")

ferygood/TEKRABber documentation built on March 11, 2023, 5:03 a.m.