Dataset contains gene/TE expression data from control and treatment based on syn8466812 RNA-seq (Allen M et al., 2016) for correlation analysis. These data were also modified due to confidential agreement. Therefore, it cannot represent the original data. For a quick demonstration, we only use 10 genes and 10 transposable elements.
An object of class "TekCorrSet" which contains 4 expression counts and you can access it specifying the parameters using assay_tekcorrset():
control gene expression data
control TE expression data
treatment gene expression data
treatment TE expression data
data(ctCorr) geneConCorrInput <- assay_tekcorrset(ctCorr, "gene", "control") teConCorrInput <- assay_tekcorrset(ctCorr, "te", "control") geneTreatCorrInput <- assay_tekcorrset(ctCorr, "gene", "treatment") teTreatCorrInput <- assay_tekcorrset(ctCorr, "te", "treatment")
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