ctCorr: Normalized Gene/TE expression toy data in control and...

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

Normalized Gene/TE expression toy data in control and treatment in same species for correlation analysis

Description

Dataset contains gene/TE expression data from control and treatment based on syn8466812 RNA-seq (Allen M et al., 2016) for correlation analysis. These data were also modified due to confidential agreement. Therefore, it cannot represent the original data. For a quick demonstration, we only use 10 genes and 10 transposable elements.

Usage

data(ctCorr)

Format

An object of class "TekCorrSet" which contains 4 expression counts and you can access it specifying the parameters using assay_tekcorrset():

assay_tekcorrset(ctCorr, "gene", "control")

control gene expression data

assay_tekcorrset(ctCorr, "te", "control")

control TE expression data

assay_tekcorrset(ctCorr, "gene", "treatment")

treatment gene expression data

assay_tekcorrset(ctCorr, "te", "treatment")

treatment TE expression data

Examples

data(ctCorr)
geneConCorrInput <- assay_tekcorrset(ctCorr, "gene", "control")
teConCorrInput <- assay_tekcorrset(ctCorr, "te", "control")
geneTreatCorrInput <- assay_tekcorrset(ctCorr, "gene", "treatment")
teTreatCorrInput <- assay_tekcorrset(ctCorr, "te", "treatment")

ferygood/TEKRABber documentation built on March 11, 2023, 5:03 a.m.