speciesCorr: A subsets of normalized Gene/TE expression data from...

In ferygood/TEKRABber: An R package estimates the correlations of orthologs and transposable elements between two species

A subsets of normalized Gene/TE expression data from human/chimpanzee brain RNA-seq for correlation analysis demonstration

Description

An object of class "TekCorrSet" which contains 4 expression counts. These data are generated from speciesCounts using TEKRABber pipeline. For a quick demo, we only select 50 orthologs and 50 transposable elements.

Usage

data(speciesCorr)

Format

An object of class "TekCorrSet" which contains 4 expression counts and you can access it specifying the parameters using assay_tekcorrset():

assay_tekcorrset(speciesCorr, "gene", "human")

human gene expression data

assay_tekcorrset(speciesCorr, "te", "human")

human TE expression data

assay_tekcorrset(speciesCorr, "gene", "chimpanzee")

chimpanzee gene expression data

assay_tekcorrset(speciesCorr, "te", "chimpanzee")

chimpanzee TE expression data

Examples

data(speciesCorr)
hmGeneCorrInput <- assay_tekcorrset(speciesCorr, "gene", "human")
hmTECorrInput <- assay_tekcorrset(speciesCorr, "te", "human")
chimpGeneCorrInput <- assay_tekcorrset(speciesCorr, "gene", "chimpanzee")
chimpTECorrInput <- assay_tekcorrset(speciesCorr, "te", "chimpanzee")

ferygood/TEKRABber documentation built on March 11, 2023, 5:03 a.m.