API for ffeng23/PAST
Protoarray Analysis Software Tool

Global functions
PMT.adjust Source code
adjust.Matrix Source code
array.aggregate Source code
bc Source code
cmatrix2dataframe Source code
combineDataNGene Source code
dataframe.aggregateGenes Source code
disaggregateVec Source code
f5pl Source code
fit.RLM Source code
fitShifts5plSingle Source code
gainAdjust.aggregate Source code
gainAdjust.alignData Source code
gainAdjust.fit5plArray Source code
gainAdjust.fitArrayByBlock Source code
gainAdjust.fnRes3pFpl Source code
gainAdjust.fnRes3pShift Source code
gainAdjust.fnRes4pFpl Source code
gainAdjust.fnRes4pShift Source code
gainAdjust.fnRes5pFpl Source code
gainAdjust.fnRes5pShift Source code
gainAdjust.fnResShift Source code
gainAdjust.fnResShiftSingle Source code
gainAdjust.fplFit Source code
gainAdjust.insertAt Source code
gainAdjust.plot Source code
gainAdjust.plotCompareFit Source code
gainAdjust.prepareInits Source code
gainAdjust.prepareInitsLM Source code
gainAdjust.prepareInput Source code
generateGammaMatrix Source code
identifyFeatures Source code
importTextData Source code
interArrayCVs Source code
interArrayMVs Source code
intraArrayCVs Source code
intraArrayMVs Source code
matrix.aggregate Source code
matrix2dframe Source code
normalizeArrays Source code
normalizeArrays.RLM Source code
plotSNR Source code
rScaledChisq Source code
readFactors Source code
rmLowCtlGenes Source code
rmLows Source code
sampleMean Source code
sampleSizes Source code
sampleVariance Source code
sampleVariancePosterior Source code
sampleVariancePrior Source code
signalToNoiseRatio Source code
simulateExpression Source code
sub.effects.Dummy Source code
sub.effects.Simple Source code
transformData Source code
weight.matrix Source code
ffeng23/PAST documentation built on Oct. 1, 2018, 5:13 p.m.