Files in gaow/mmbr

Multivariate Sum of Single Effects Regression

.Rbuildignore

.circleci/config.yml

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

Makefile

NAMESPACE

R/README.md R/bayesian_multivariate_regression.R R/bayesian_simple_regression.R R/benchmarking.R R/datasim.R R/dense_data.R R/dense_data_missing.R R/ibss_algorithm.R R/mash.R R/mash_regression.R R/methods.R R/mvsusie.R R/mvsusie_core.R R/mvsusie_plot.R R/mvsusie_rss.R R/mvsusie_ss.R R/mvsusie_utils.R R/rssdata.R R/simdata.R R/single_effect_model.R R/ssdata.R R/unused.R R/utils.R README.md

_pkgdown.yml

config.yml

data/simdata.RData

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/index.html

docs/articles/mvsusie_intro.html

docs/articles/mvsusie_intro_files/figure-html/compare-residual-estimate-1.png

docs/articles/mvsusie_intro_files/figure-html/effect-plot-1.png

docs/articles/mvsusie_intro_files/figure-html/pip-plot-1.png

docs/articles/mvsusie_intro_files/figure-html/raw-vs-summary-1.png

docs/articles/mvsusie_intro_files/figure-html/unnamed-chunk-1-1.png

docs/articles/mvsusie_intro_files/figure-html/unnamed-chunk-2-1.png

docs/articles/prediction.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/BayesianMultivariateRegression.html

docs/reference/BayesianSimpleRegression.html

docs/reference/DenseData.html

docs/reference/DenseDataYMissing.html

docs/reference/MashInitializer.html

docs/reference/MashRegression.html

docs/reference/NIGMGRegression.html

docs/reference/RSSData.html

docs/reference/Rplot001.png

docs/reference/SSData.html

docs/reference/SingleEffectModel.html

docs/reference/SuSiE.html

docs/reference/almost.duplicated.html

docs/reference/compute_softmax.html

docs/reference/create_cov_canonical.html

docs/reference/create_mash_prior.html

docs/reference/create_mixture_prior.html

docs/reference/index.html

docs/reference/invert_chol_tri.html

docs/reference/invert_via_chol.html

docs/reference/isDiagonal.html

docs/reference/is_diag_mat.html

docs/reference/is_list_common.html

docs/reference/is_mat_common.html

docs/reference/is_numeric_matrix.html

docs/reference/is_zero_variance.html

docs/reference/matlist2array.html

docs/reference/muffled_chol.html

docs/reference/multivariate_lbf.html

docs/reference/multivariate_regression.html

docs/reference/mvsusie.html

docs/reference/mvsusie_core.html

docs/reference/mvsusie_get_alpha_per_condition.html

docs/reference/mvsusie_get_lfsr.html

docs/reference/mvsusie_get_pip_per_condition.html

docs/reference/mvsusie_plot-1.png

docs/reference/mvsusie_plot.html

docs/reference/mvsusie_plot_simple.html

docs/reference/mvsusie_rss.html

docs/reference/mvsusie_sim1.html

docs/reference/mvsusie_single_effect_lfsr.html

docs/reference/mvsusie_suff_stat.html

docs/reference/null_progress_bar.html

docs/reference/predict.mvsusie.html

docs/reference/pseudo_inverse.html

docs/reference/reconstruct_coll.html

docs/reference/report_susie_model.html

docs/reference/rm_collinear.html

docs/reference/scale_covariance.html

docs/reference/simdata.html

docs/reference/tr.html

docs/sitemap.xml

inst/code/prediction.Rmd

inst/misc/format_r_code.sh

inst/misc/post-commit.sh

inst/misc/pre-commit.sh

inst/prototypes/Multivariate_Computation_Compared_Univariate.ipynb

inst/prototypes/README.md

inst/prototypes/elbo_implementation.ipynb

inst/prototypes/elbo_prior_est.ipynb

inst/prototypes/em_inv_prior_est.ipynb

inst/prototypes/em_optim_difference.ipynb

inst/prototypes/em_optim_difference.rds

inst/prototypes/em_optim_est_prior.ipynb

inst/prototypes/lfsr_for_CS.ipynb

inst/prototypes/lite_data_1.rds

inst/prototypes/lite_data_1_artificial_mixture_1.rds

inst/prototypes/lite_data_1_artificial_mixture_1_mnm_shared_1.rds

inst/prototypes/marginal_stats_compare.ipynb

inst/prototypes/mash_compare_simple_multivariate.ipynb

inst/prototypes/mash_regression_univariate_degenerated.ipynb

inst/prototypes/missing_data_precomputed.ipynb

inst/prototypes/multivariate_est_prior.ipynb

inst/prototypes/multivariate_regression.ipynb

inst/prototypes/mvsusie_mwe.ipynb

inst/prototypes/openmp_prototype.ipynb

inst/prototypes/oracle_generator_1.pkl

inst/prototypes/output_visualization.ipynb

inst/prototypes/precomputed_quantities_mash.ipynb

inst/prototypes/prior_matrices_scale.ipynb

inst/prototypes/remove_all_neg_lbf.ipynb

inst/prototypes/small_data_1.rds

inst/prototypes/small_data_100.rds

inst/prototypes/small_data_100_mixture01_1.pkl

inst/prototypes/small_data_100_mixture01_1_oracle_generator_1_mnm_mixture01_1.rds

inst/prototypes/small_data_100_singleton_1.pkl

inst/prototypes/small_data_1_singleton_1.pkl

inst/prototypes/two_snps_dispute.ipynb

inst/prototypes/two_snps_dispute_missing_data.ipynb

inst/prototypes/univariate_algorithm_agreement.ipynb

man/coef.mvsusie.Rd man/create_cov_canonical.Rd man/create_mixture_prior.Rd man/mvsusie.Rd man/mvsusie_get_lfsr.Rd man/mvsusie_plot.Rd man/mvsusie_sim1.Rd man/mvsusie_single_effect_lfsr.Rd man/predict.mvsusie.Rd man/simdata.Rd

release

tests/testthat.R tests/testthat/helper_testthat.R tests/testthat/test_bayesian_simple_regression.R tests/testthat/test_convergence_check.R tests/testthat/test_estimate_residual.R tests/testthat/test_mash_regression.R tests/testthat/test_missing_sumstats.R tests/testthat/test_mvsusie_coef.R tests/testthat/test_mvsusie_predict.R tests/testthat/test_single_effect_model.R tests/testthat/test_suff_sumstats.R tests/testthat/test_susie_regression.R vignettes/mvsusie_intro.Rmd

gaow/mmbr documentation built on April 3, 2024, 6:50 a.m.