Implements a multivariate generalization of the "Sum of Single Effects" (SuSiE) model for variable selection in multivariate linear regression.
To install the latest version of the mvsusieR package from GitHub, run the following code in R:
install.packages("remotes")
library(remotes)
install_github("stephenslab/mvsusieR")
This command should automatically install all required packages if they are not installed already.
Note that mvsusieR uses mashr, which in turn requires the GNU Scientific libraries (GSL). You may want to install mashr first before attempting to install mvsusieR.
Here is a quick document to show mvsusieR in action. See here more documentation and examples.
When any changes are made to roxygen2
markup, simply run
devtools::document()
to update package NAMESPACE
and documentation files.
To install and test the package, run the following commands in the shell:
bash
VERSION=`grep Version DESCRIPTION | awk '{print $2}'`
R CMD build --resave-data --no-build-vignettes mvsusieR
R CMD INSTALL mvsusieR_$VERSION.tar.gz
R CMD check --as-cran --ignore-vignettes mvsusieR_$VERSION.tar.gz
Run pkgdown::build_site()
to build the pkgdown site.
To format R codes in the R
folder,
bash
for i in `ls R/*.R`; do bash inst/misc/format_r_code.sh $i; done
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.