filter.samples: Filters AFLP matrices to remove poor quality samples

Description Usage Arguments Examples

View source: R/filter.samples.R

Description

This function reads a STRUCTURE-formatted AFLP dataset and writes a filtered version of that file

Usage

1
filter.samples(infile, outfile, cutoff = 1)

Arguments

infile

filename of Structure dataset

outfile

desired filename for filtered Structure dataset

cutoff

number of standard deviations below the mean to use as a threshold

Examples

1
filter.samples(myStructureFile,filteredStructureFile, cutoff)

geneva/AFLPTools documentation built on May 14, 2017, 8:47 a.m.