makeTable: Create AFLP data matrix from raw peak heights

Description Usage Arguments Examples

View source: R/makeTable.R

Description

This function creates AFLP data matrix from raw peak heights scored using user determined locus and phenotype thresholds. This function borrows heavily from AFLPscore v1.4 by Raj Whitlock Whitlock et al. 2008 Mol Ecol Res. 8:725-735 shef.ac.uk/molecol/software/aflpscore

Usage

1
makeTable(filename, binthresh, allelethresh)

Arguments

filename

filename of matrix containing duplicates

duplicates

integer, the number of duplicate pairs

Examples

1
makeTable(myRawPeakHeights,binthresh=100,allelethresh=100)

geneva/AFLPTools documentation built on May 14, 2017, 8:47 a.m.