HFLODplotChr: Plot of the HFLOD

Description Usage Arguments Details Value See Also Examples

Description

This fonction plot the HFLOD score for a chromosome

Usage

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HFLODplotChr(submaps, unit = "cM", chr, regions, color2 = "green4",
  MA = TRUE, nbSNP_MA = 50)

Arguments

submaps

a atlas object

unit

the unit used to plot, two options are allowed "Bases", "cM" (default is "CM")

chr

the chromosome number from which to plot HFLOD score

regions

a matrix containing the value to ve highlighted in the plot

color2

the color of the regions highlighted (default is "green4")

MA

a boolean indicating whether a red line has to be drawn for the moving average

nbSNP_MA

number of SNP for the moving average (default is 50)

Details

If you use the regions options make sure to pass a matrix containing one line per region to be highlighted with in each line :

- the chromosome number

- start

- end

Value

This function returns a manhattan plot of all the HFLOD score over all the chromosome

See Also

setHFLOD

Examples

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#Please refer to vignette 

genostats/Fantasio documentation built on June 30, 2019, 2:25 a.m.