prodigal: prodigal

In giraola/taxxo: Integrating and automatising tools for prokaryotes taxonogenomics

Description

Predicts protein coding genes from the genome using Prodigal.

Usage

prodigal(path = ".", pattern = ".fasta", outdir = "prodigal_output",
  proc = 2)

Arguments

path	is the full path to where genomes in fasta format are placed.
pattern	a pattern (like '.fasta') for recognizing the genome files.
outdir	a name for the output directory that will be created for results.

Examples

rrna(path='.',pattern='.fasta',outdir='prodigal_output')

giraola/taxxo documentation built on May 17, 2019, 5:25 a.m.