cran-comments.md

In gluc/data.tree: General Purpose Hierarchical Data Structure

General Comments

This release was done as requested by Kurt Hornik, because of a problem with roxygen2. I now used "_PACKAGE" and it should solvel the problem. Also I added a few features and fixed a few bugs. Finally, I deprecated two functions, as anounced earlier ($fields and $fieldsAll).

Best Regards, Christoph

Test environments

• github -> (macos-latest release, windows-latest release, ubuntu-latest devel, ubuntu-latest release, ubuntu-latest oldrel-1) -> OK
• rhub::check_for_cran -> NOTES

R CMD check results

There were no ERRORs or WARNINGs.

I'm getting funny NOTES on rhub::check_for_cran:

* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Christoph Glur <[e-mail]>'

New maintainer:
  Christoph Glur <[e-mail]>
Old maintainer(s):
  Christoph Glur <[e-mail]>
* checking Rd files ... NOTE
checkRd: (-1) s3_register.Rd:46-48: Lost braces
    46 | if (getRversion() >= "3.6.0") {
       |                               ^
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ''NULL''
* checking for detritus in the temp directory ... NOTE
Found the following files/directories:
  'lastMiKTeXException'

I couldn't reproduce this anywhere else, and I'm not sure if this is an issue with my code or with the check environment.

Let me know if I was careless and there is anything for me to fix.

revdepcheck results

We checked 53 reverse dependencies (46 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

• We saw 3 new problems
• We failed to check 0 packages

Issues with CRAN packages are summarised below.

New problems

(This reports the first line of each new failure)

• collapsibleTree checking examples ... WARNING

• directotree checking examples ... WARNING

• forestry checking examples ... WARNING

✔ behaviorchange 0.5.5 ── E: 0 | W: 0 | N: 0 ✖ collapsibleTree 0.1.7 ── E: 0 | W: 0 +1 | N: 2 ✔ covid19dbcand 0.1.1 ── E: 0 | W: 0 | N: 0 ✔ Cluster.OBeu 1.2.3 ── E: 0 | W: 0 | N: 0 ✔ CondCopulas 0.1.3 ── E: 0 | W: 0 | N: 0 ✖ directotree 1.0.0 ── E: 0 | W: 0 +1 | N: 1 ✔ CovRegRF 1.0.4 ── E: 0 | W: 0 | N: 0 ✔ echarty 1.6.2 ── E: 0 | W: 0 | N: 0 ✔ changepoints 1.1.0 ── E: 0 | W: 0 | N: 0 ✔ filterNHP 0.1.2 ── E: 0 | W: 0 | N: 1 ✖ forestry 0.1.0 ── E: 0 | W: 0 +1 | N: 0 ✔ echarts4r 0.4.5 ── E: 0 | W: 0 | N: 0 ✔ GE 0.4.0 ── E: 0 | W: 0 | N: 0 ✔ gimme 0.7.15 ── E: 0 | W: 0 | N: 0 ✔ galah 1.5.4 ── E: 0 | W: 0 | N: 0 ✔ icesTAF 4.2.0 ── E: 0 | W: 0 | N: 0 ✔ htetree 0.1.17 ── E: 0 | W: 0 | N: 0 ✔ justifier 0.2.6 ── E: 0 | W: 0 | N: 0 ✔ LinTInd 1.6.0 ── E: 1 | W: 0 | N: 2 ✔ cola 2.8.0 ── E: 1 | W: 0 | N: 1 ✔ nmarank 0.3.0 ── E: 0 | W: 0 | N: 0 ✔ LACE 2.6.0 ── E: 0 | W: 0 | N: 1 ✔ momentuHMM 1.5.5 ── E: 1 | W: 0 | N: 0 ✔ pmxTools 1.3 ── E: 0 | W: 1 | N: 0 ✔ nonlinearICP 0.1.2.1 ── E: 0 | W: 0 | N: 0 ✔ radiant.model 1.6.3 ── E: 0 | W: 0 | N: 0 ✔ Pi 2.14.0 ── E: 0 | W: 0 | N: 1 ✔ ranktreeEnsemble 0.22 ── E: 0 | W: 0 | N: 0 ✔ randomForestSRC 3.2.2 ── E: 0 | W: 0 | N: 0 ✔ RFpredInterval 1.0.7 ── E: 0 | W: 0 | N: 0 ✔ Rgff 0.1.6 ── E: 0 | W: 0 | N: 1 ✔ SACCR 3.2 ── E: 0 | W: 0 | N: 0 ✔ shinyTree 0.3.1 ── E: 0 | W: 0 | N: 0 ✔ ClassifyR 3.6.2 ── E: 1 | W: 0 | N: 3 ✔ rock 0.6.7 ── E: 0 | W: 0 | N: 0 ✔ scicomptools 1.0.0 ── E: 0 | W: 0 | N: 0 ✔ SoilTaxonomy 0.2.3 ── E: 0 | W: 0 | N: 0 ✔ rocTree 1.1.1 ── E: 0 | W: 0 | N: 1 ✔ styler 1.10.2 ── E: 0 | W: 0 | N: 0 ✔ supportR 1.2.0 ── E: 0 | W: 0 | N: 0 ✔ tidygraph 1.2.3 ── E: 0 | W: 0 | N: 0 ✔ starvz 0.7.1 ── E: 0 | W: 0 | N: 0 ✔ triversity 1.0 ── E: 0 | W: 0 | N: 0 ✔ TT 0.98 ── E: 0 | W: 0 | N: 0 ✔ VERSO 1.12.0 ── E: 0 | W: 0 | N: 0 ✔ voronoiTreemap 0.2.0 ── E: 0 | W: 0 | N: 0 ✔ TKCat 1.0.7 ── E: 0 | W: 0 | N: 0 ✔ webchem 1.3.0 ── E: 0 | W: 0 | N: 0 ✔ yum 0.1.0 ── E: 0 | W: 0 | N: 0 ✔ wrTopDownFrag 1.0.2 ── E: 0 | W: 0 | N: 1 ✔ scAnnotatR 1.8.0 ── E: 0 | W: 0 | N: 0 ✔ wrMisc 1.13.0 ── E: 0 | W: 0 | N: 0 ✔ UniprotR 2.3.0 ── E: 0 | W: 0 | N: 0

Problems Description

All three problems are a result of the deprecated functions. I notified the maintainers of the packages.

gluc/data.tree documentation built on Nov. 16, 2023, 10:49 p.m.