WriteTNTForAnalysisMultiMRP: Counts the changes in a series of time bins

Description Usage Arguments Details Value Author(s) Examples

View source: R/WriteTNTForAnalysisMultiMRP.R

Description

Given a vector of dates for a series of time bins and another for the times when a character change occurred will return the total number of changes in each bin.

Usage

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WriteTNTForAnalysisMultiMRP(clad.matrix, file.name, n.iterations = 20,
  n.trees = 5000)

Arguments

clad.matrix

Text.

file.name

Text.

n.iterations

Text.

n.trees

Text.

Details

Calculates the total number of evolutionary changes in a series of time bins. This is intended as an internal function for rate calculations, but could be used for other purposes (e.g., counting any point events in a series of time bins).

Value

A vector giving the number of changes for each time bin. Names indicate the maximum and minimum (bottom and top) values for each time bin.

Author(s)

Graeme T. Lloyd [email protected]

Examples

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# Create a random dataset of 100 changes:
change.times <- runif(100, 0, 100)

# Create time bins:
time.bins <- seq(100, 0, length.out=11)

# Get N changes for each bin:
ChangesInBins(change.times, time.bins)

graemetlloyd/metatree documentation built on Aug. 13, 2018, 1:06 a.m.