R/datasets.R

In grantbrown/ABSEIR: Posterior Approximation to Fully Bayesian Spatial SEIR Models Using Multithreaded C++

#' Ebola Case Counts by Day - 1995 Outbreak in Kikwit
#' 
#' A dataset containing Ebola case counts by day between 3-6-1995 and 9-18-1995. 
#' 
#' 
#' @format A data frame with 197 rows and 2 variables
#' \describe{
#'     \item{Date}{case index date}
#'     \item{Count}{number of cases observed}
#' }
#' @references Lekone, P.E. and Finkenstadt, B.F. (2006). Statistical inference in a stochastic epidemic
#' SEIR model with control intervention: Ebola as a case study. Biometrics 62,1170-1177
"Kikwit1995"

#' Ebola Case Count reports - 2014 and 2015 outbreak in West Africa (CDC/WHO)
#' 
#' A dataset containing cumulative Ebola case counts between 3-22-2014 and 3-29-2015 
#' 
#' 
#' @format A data frame with 133 rows and 18 variables
#' \describe{
#'     \item{Date}{Case report date}
#'     \item{Day}{Day index}
#'     \item{Cases_Guinea}{Cumulative cases - Guinea}
#'     \item{Cases_Liberia}{Cumulative cases - Liberia}
#'     \item{Cases_SierraLeone}{Cumulative cases - Sierra Leone}
#'     \item{Cases_Nigeria}{Cumulative cases - Nigeria}
#'     \item{Cases_Senegal}{Cumulative cases - Senegal}
#'     \item{Cases_UnitedStates}{Cumulative cases - United States}
#'     \item{Cases_Spain}{Cumulative cases - Spain}
#'     \item{Cases_Mali}{Cumulative cases - Mali}
#'     \item{Deaths_Guinea}{Cumulative deaths - Guinea }
#'     \item{Deaths_Liberia}{Cumulative deaths - Liberia }
#'     \item{Deaths_SierraLeone}{Cumulative deaths - Sierra Leone }
#'     \item{Deaths_Nigeria}{Cumulative deaths - Nigeria }
#'     \item{Deaths_Senegal}{Cumulative deaths - Senegal }
#'     \item{Deaths_UnitedStates}{Cumulative deaths - United States }
#'     \item{Deaths_Spain}{Cumulative deaths - Spain }
#'     \item{Deaths_Mali}{Cumulative deaths - Mali }
#' }
#' @source \url{https://github.com/cmrivers/ebola}
"WestAfrica2015"