filterBiotype: Extract the genes that have user provided biotypes. This...

In guldenolgun/NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

Extract the genes that have user provided biotypes. This method is useful when input gene list is mixed or when research of the interest is only focused on specific group of genes.

Description

Extract the genes that have user provided biotypes. This method is useful when input gene list is mixed or when research of the interest is only focused on specific group of genes.

Usage

filterBiotype(gtfFile, biotypes)

Arguments

gtfFile	Input gtf file for the genes provided by the extractBiotype function
biotypes	Selected biotypes for the genes

Value

Table format of genes with a given biotypes

Examples

## Not run: 
biotypes <- c('unprocessed_pseudogene','transcribed_unprocessed_pseudogene')
fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE")
extrResult <- filterBiotype(fileImport, biotypes)

## End(Not run)

guldenolgun/NoRCE documentation built on Oct. 21, 2022, 11:48 a.m.