R/ibd_lineages.R

In hallucigenia-sparsa/seqgroup: Analysis of Sequencing Data with Groups

#' @title Lineages for taxa from the PRISM cohort
#'
#' @description Lineages include the levels kingdom, phylum, class, order, family, genus and species.
#' @details Row names match taxon names in ibd_taxa.
#' @return Species x phylogenetic level matrix of size 201 x 7
#' @docType data
#' @usage data(ibd_lineages)
#' @keywords data, datasets
#' @references
#' Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305
#' \href{https://www.nature.com/articles/s41564-018-0306-4}{Nature Microbiology}
#' @examples
#' data(ibd_lineages)
"ibd_lineages"