R/rcctils_sampleinfo-data.R

#' Sample info for TILs isolated from RCC patients (E-MTAB-5640)
#'
#' Used as a training dataset for infino & for demonstration/testing purposes.
#'
#' Description from the author:
#' Tumor associated macrophages and T cells were characterized in a cohort of 73
#' ccRCC and 5 healthy donors using mass cytometry. Macrophage and T cell subsets
#' of interest were identified and sorted directly from samples known to contain
#' a high frequency of these subsets. CD8+ PD-1- T cells (n=6), exhausted CD8+
#' PD-1+ T cells (n=6), control macrophages CD14+ HLA-DR+ CD204- CD38- CD206- (n=11)
#' and a population of TAM characterized as CD14+ HLA-DR+ CD204+ CD38+ CD206- (n=6)
#' were isolated using FACS sorting.
#'
#' @docType data
#'
#' @usage data(rcctils_sampleinfo)
#'
#' @format an object of class \code{"tbl_df"}
#'
#' @keywords datasets
#'
#' @references E-MTAB-5640 - RNA sequencing of tumor associated macrophages and T cells in clear cell renal cell carcinoma
#' (\href{https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5640/}{ArrayExpress})
"rcctils_sampleinfo"
hammerlab/rinfino documentation built on May 27, 2019, 8:45 a.m.