readYAML: Read YAML Sample Data and Metrics

Description Usage Arguments Value Note Author(s) See Also Examples

Description

Read YAML Sample Data and Metrics

Usage

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Arguments

file

string. File path to bcbio project-summary.yaml.

Value

data.frame.

Note

Metrics are only generated for a standard RNA-seq run with aligned counts. Fast RNA-seq mode with lightweight counts (pseudocounts) doesn't output the same metrics into the YAML.

Author(s)

Michael Steinbaugh

See Also

Other Read Functions: readDataVersions, readLog, readProgramVersions, readSampleData, readTx2gene

Examples

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file <- "http://bcbiobase.seq.cloud/project-summary.yaml"
readYAMLSampleData(file) %>% glimpse()
readYAMLSampleMetrics(file) %>% glimpse()

hbc/bcbioBase documentation built on Aug. 21, 2018, 5:50 a.m.