API for heavywatal/tumorr
R interface to tumopp, a tumor growth simulator in C++

Global functions
accumulate_paths_to_source Source code
add_col Man page Source code
add_node_property Source code
add_phi Man page Source code
add_surface Man page Source code
append_o Source code
as_ids Source code
as_idx Source code
combn_ids Man page Source code
combn_int_list Source code
count_sink Source code
cpp_tumopp Man page Source code
detect_surface Source code
df2img Source code
dist_euclidean Man page Source code
distances_from_origin Source code
distances_mrs Man page Source code
evaluate_mrs Man page Source code
evenness Source code
extract_history Man page Source code
filter_common_ancestors Man page Source code
filter_detectable Man page Source code
filter_extant Man page Source code
filter_surface Source code
filter_valid_LP Source code
from_json Source code
fst_HBK Source code
generate_args Source code
generate_valid Source code
genetic_stats Man page Source code
get_se Source code
histogram_freqspec Man page Source code
igraph_layout Source code
igraph_layout_nodes Source code
img2df Source code
internal_nodes Man page Source code
kmeans_centers Source code
layout_genealogy Man page Source code
list_clade_founders Source code
make_args Man page Source code
make_igraph Man page Source code
make_sample Man page Source code
make_vaf Man page Source code
math_score Man page Source code
max_abs_xyz Man page Source code
mean_branch_length Man page Source code
mean_sd Source code
morphological_stats Man page Source code
mutate_clades Man page Source code
mutate_jitter Source code
onLoad Source code
onUnload Source code
paths_to_sink Source code
paths_to_source Source code
plot_bar_age Man page Source code
plot_capture_rate Man page Source code
plot_genealogy Man page Source code
plot_lattice2d Man page Source code
plot_tumor3d Man page Source code
propagate_drivers Man page Source code
range_nsam Source code
read_boost_ini Source code
read_conf Source code
read_confs Man page Source code
read_json Source code
read_populations Man page Source code
read_results Man page Source code
read_snapshots Man page Source code
read_tumopp Man page Source code
revert_coord_fcc Source code
revert_coord_hex Source code
revert_coord_hex_xy Source code
sample_bulk Man page Source code
sample_random_regions Man page Source code
sample_regions Source code
sample_uniform_regions Man page Source code
save_serial_section Man page Source code
shannon_index Source code
snapshot_surface Man page Source code
sort_clades Source code
sort_vaf Man page Source code
subtree Man page Source code
summarise_demography Man page Source code
summarize_capture_rate Man page Source code
tally_vaf Man page Source code
tidy_regions Source code
tidy_vaf Man page Source code
to_json Source code
trans_coord_fcc Source code
trans_coord_hcc Source code
trans_coord_hex Man page Source code
trans_coord_hex_xy Source code
transform_rotate Man page Source code
tumopp Man page Source code
tumopp-package Man page
tumopp.default Man page Source code
tumopp.list Man page Source code
union_int Source code
valid_LP_combinations Source code
vectorize_args Source code
within_between_samples Man page Source code
write_result Source code
write_results Man page Source code
heavywatal/tumorr documentation built on Nov. 8, 2018, 2:27 p.m.