API for heavywatal/tumorr
R interface to tumopp, a tumor growth simulator in C++
| Global functions | |
|---|---|
| .onUnload | Source code |
| .read_conf | Source code |
| .read_result | Source code |
| .write_result | Source code |
| add_col | Man page Source code |
| add_node_property | Source code |
| add_phi | Man page Source code |
| add_surface | Man page Source code |
| append_seed | Source code |
| as.array.cuboid | Man page Source code |
| as.data.frame.cuboid | Man page Source code |
| as_cuboid | Man page Source code |
| as_symbolic_edgelist | Source code |
| augment_genealogy | Man page Source code |
| cache_name | Source code |
| combn_ids | Man page Source code |
| combn_int_list | Source code |
| count_extant | Man page Source code |
| count_extant_descendants | Source code |
| count_sink | Source code |
| detect_surface | Source code |
| dist_euclidean | Man page Source code |
| dist_genealogy | Man page Source code |
| dist_vaf | Man page Source code |
| distances_from_origin | Source code |
| distances_mrs | Man page Source code |
| evaluate_mrs | Man page Source code |
| evenness | Source code |
| expand_xyz | Source code |
| extract_history | Man page Source code |
| filter_common_ancestors | Man page Source code |
| filter_detectable | Man page Source code |
| filter_extant | Man page Source code |
| filter_surface | Source code |
| filter_valid_LP | Source code |
| from_json | Source code |
| fst | Man page Source code |
| generate_args | Source code |
| generate_valid | Source code |
| genetic_distance | Source code |
| genetic_stats | Man page Source code |
| gggenealogy | Man page Source code |
| gst | Man page Source code |
| histogram_freqspec | Man page Source code |
| internal_nodes | Man page Source code |
| kmeans_centers | Source code |
| list_clade_founders | Source code |
| longer_vaf | Man page Source code |
| lower_tri | Source code |
| make_args | Man page Source code |
| make_igraph | Man page Source code |
| make_longer_vaf | Man page Source code |
| make_sample | Man page Source code |
| make_vaf | Man page Source code |
| math_score | Man page Source code |
| max_abs_xyz | Man page Source code |
| mean_branch_length | Source code |
| mean_sd | Source code |
| morphological_stats | Man page Source code |
| mutate_chisq | Man page Source code |
| mutate_clades | Source code |
| neighborhood_in | Source code |
| neighborhood_out | Source code |
| nth_element | Source code |
| num_pairs | Source code |
| p_hetero | Source code |
| pairwise_distances | Man page Source code |
| pairwise_fst | Man page Source code |
| palette_colors | Source code |
| paths_to_sink | Source code |
| paths_to_source | Source code |
| plot_capture_rate | Man page Source code |
| plot_lattice2d | Man page Source code |
| plot_tumor3d | Man page Source code |
| propagate_drivers | Man page Source code |
| read_boost_ini | Source code |
| read_confs | Man page Source code |
| read_json | Source code |
| read_results | Man page Source code |
| read_tumopp | Man page Source code |
| remove_tandem_ancestors | Source code |
| revert_coord_fcc | Source code |
| revert_coord_hex | Source code |
| revert_coord_hex_xy | Source code |
| rpois_dispersion | Man page Source code |
| runif.int | Source code |
| sample_bulk | Man page Source code |
| sample_random_regions | Man page Source code |
| sample_regions | Source code |
| sample_uniform_regions | Man page Source code |
| save_serial_section | Man page Source code |
| shannon_index | Source code |
| shortest_dist_from_source | Source code |
| sink_nodes | Source code |
| sinks | Source code |
| snapshot_surface | Man page Source code |
| sort_clades | Source code |
| sort_vaf | Man page Source code |
| stats_dispersion | Man page Source code |
| structuring_element | Source code |
| subgraph_random_sink | Source code |
| subtree | Man page Source code |
| summarize_capture_rate | Man page Source code |
| summarize_demography | Man page Source code |
| summary_row | Man page Source code |
| tibble_dchisq | Man page Source code |
| tidy_regions | Source code |
| to_json | Source code |
| trans_coord_fcc | Source code |
| trans_coord_hcc | Source code |
| trans_coord_hex | Man page Source code |
| trans_coord_hex_xy | Source code |
| transform_rotate | Man page Source code |
| tumopp | Man page Source code |
| tumopp-package | Man page |
| tumopp.data.frame | Man page Source code |
| tumopp.default | Man page Source code |
| tumopp.list | Man page Source code |
| tumopp_path | Man page Source code |
| tumopp_version | Man page Source code |
| union_int | Source code |
| upstream_vertices | Source code |
| valid_LP_combinations | Source code |
| vectorize_args | Source code |
| weighted_mean | Source code |
| write_results | Man page Source code |
