Files in heavywatal/tumorr

R interface to tumopp, a tumor growth simulator in C++

.Rbuildignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/coord.R R/cpp11.R R/demography.R R/dispersion.R R/distance.R R/driver.R R/fst.R R/graph.R R/heterogeneity.R R/hex.R R/morphology.R R/ms.R R/path.R R/plot-genealogy.R R/plot-rgl.R R/plot.R R/population.R R/read.R R/sample-combn.R R/sample.R R/summarize.R

R/sysdata.rda

R/tumopp-package.R R/tumopp.R R/vaf.R R/write.R README.md

_pkgdown.yml

cleanup

codecov.yml

configure

demo/00Index

demo/early.R demo/rgl.R demo/run.R demo/sample.R

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/benchmark.html

docs/articles/benchmark_files/figure-html/memory-1.png

docs/articles/benchmark_files/figure-html/time-1.png

docs/articles/genealogy.html

docs/articles/growth.html

docs/articles/index.html

docs/articles/sampling.html

docs/articles/tumopp.html

docs/authors.html

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map

docs/deps/bootstrap-5.3.1/bootstrap.min.css

docs/deps/data-deps.txt

docs/deps/jquery-3.6.0/jquery-3.6.0.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.map

docs/index.html

docs/link.svg

docs/pkgdown.js

docs/reference/coord.html

docs/reference/cuboid.html

docs/reference/demography.html

docs/reference/dispersion.html

docs/reference/distance.html

docs/reference/drivers.html

docs/reference/fst.html

docs/reference/graph.html

docs/reference/heterogeneity.html

docs/reference/hex.html

docs/reference/index.html

docs/reference/morphology.html

docs/reference/ms.html

docs/reference/plot-biopsy.html

docs/reference/plot-genealogy.html

docs/reference/plot-rgl.html

docs/reference/plot-section.html

docs/reference/plot.html

docs/reference/population.html

docs/reference/read.html

docs/reference/sample-combn.html

docs/reference/sample.html

docs/reference/summarize.html

docs/reference/tumopp-package.html

docs/reference/tumopp.html

docs/reference/vaf.html

docs/reference/write.html

docs/search.json

docs/sitemap.xml

inst/CITATION

inst/_pkgdown.yml

man/coord.Rd man/cuboid.Rd man/demography.Rd man/dispersion.Rd man/distance.Rd man/drivers.Rd man/fst.Rd man/graph.Rd man/heterogeneity.Rd man/hex.Rd man/morphology.Rd man/ms.Rd man/path.Rd man/plot-biopsy.Rd man/plot-genealogy.Rd man/plot-rgl.Rd man/plot-section.Rd man/plot.Rd man/population.Rd man/read.Rd man/sample-combn.Rd man/sample.Rd man/summarize.Rd man/tumopp-package.Rd man/tumopp.Rd man/vaf.Rd man/write.Rd

src/.gitignore

src/CMakeLists.txt

src/algorithm.cpp

src/cpp11.cpp

tests/testthat.R tests/testthat/test-coord.R tests/testthat/test-fst.R tests/testthat/test-hex.R tests/testthat/test-io.R tests/testthat/test-morphology.R tests/testthat/test-run.R tests/testthat/test-vaf.R

tumopp.Rproj

vignettes/.gitignore

vignettes/benchmark.Rmd vignettes/genealogy.Rmd vignettes/growth.Rmd vignettes/sampling.Rmd vignettes/tumopp.Rmd

heavywatal/tumorr documentation built on April 2, 2024, 7:24 p.m.