Files in helske/seqHMM
Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Examples/HMMdefault.png
Examples/HMModel.png
Examples/gridplot.png
Examples/mixHMM1.png
Examples/mixHMM2.png
Examples/mixHMM3.png
Examples/mixHMMplot.png
Examples/mixhmmexample.R
Examples/mssplot1.png
Examples/mssplot2.png
Examples/mssplot3.png
Examples/scssp.png
Examples/seqHMMexample.R
Examples/ssp1.png
Examples/sspboth.png
Examples/sspboth_default.png
NAMESPACE
NEWS
R/HMMplot.R R/RcppExports.R R/SSPlotter.R R/biofam3c.R R/build_hmm.R R/build_lcm.R R/build_mhmm.R R/build_mm.R R/build_mmm.R R/check_deprecated_args.R R/colorpalette.R R/combine_models.R R/estimate_coef.R R/fit_model.R R/forwardBackward.R R/gridplot.R R/hidden_paths.R R/hmm_biofam.R R/hmm_mvad.R R/import_seqdef.R R/isColor.R R/logLik.hmm.R R/logLik.mhmm.R R/mHMMplotgrid.R R/mHMMplotint.R R/mc_to_sc.R R/mc_to_sc_data.R R/mhmm_biofam.R R/mhmm_mvad.R R/mssplot.R R/plot.hmm.R R/plot.mhmm.R R/plot.ssp.R R/plot_colors.R R/posterior_probs.R R/print.hmm.R R/print.mhmm.R R/print.summary.mhmm.R R/separate_mhmm.R R/seqHMM-deprecated.R R/seqHMM-package.R R/simulate_hmm.R R/simulate_mhmm.R R/simulate_pars.R R/spread_models.R R/ssp.R R/ssplot.R R/ssplotM.R R/summary.mhmm.R R/trim_hmm.R R/vcov.mhmm.R README.md
data/biofam3c.rda
data/colorpalette.rda
data/hmm_biofam.rda
data/hmm_mvad.rda
data/mhmm_biofam.rda
data/mhmm_mvad.rda
inst/CITATION
man/TraMineR_imports.Rd man/biofam3c.Rd man/build_hmm.Rd man/build_lcm.Rd man/build_mhmm.Rd man/build_mm.Rd man/build_mmm.Rd man/colorpalette.Rd man/estimate_coef.Rd man/fit_model.Rd man/forward_backward.Rd man/gridplot.Rd man/hidden_paths.Rd man/hmm_biofam.Rd man/hmm_mvad.Rd man/logLik.hmm.Rd man/logLik.mhmm.Rd man/mc_to_sc.Rd man/mc_to_sc_data.Rd man/mhmm_biofam.Rd man/mhmm_mvad.Rd man/mssplot.Rd man/plot.hmm.Rd man/plot.mhmm.Rd man/plot.ssp.Rd man/plot_colors.Rd man/posterior_probs.Rd man/print.Rd man/separate_mhmm.Rd man/seqHMM-deprecated.Rd man/seqHMM.Rd man/simulate_hmm.Rd man/simulate_mhmm.Rd man/simulate_pars.Rd man/ssp.Rd man/ssplot.Rd man/summary.mhmm.Rd man/trim_model.Rd man/vcov.mhmm.Rd
manual/Art12.bib
manual/figure/MCtSCdata-1.pdf manual/figure/MHMMplot-1.pdf manual/figure/MHMMssplot-1.pdf manual/figure/gridplot2-1.pdf manual/figure/gridplotfm2-1.pdf manual/figure/plotColors-1.pdf manual/figure/plotHMM1-1.pdf manual/figure/plotHMM2-1.pdf manual/figure/plotHMM3-1.pdf manual/figure/plotI-1.pdf manual/figure/plotd-1.pdf manual/figure/seqmppplot-1.pdf
manual/seqHMM-concordance.tex
manual/seqHMM.Rnw
manual/seqHMM.bbl
manual/seqHMM.ind
manual/seqHMM.pdf
manual/seqHMM.tex
manual/seqHMM.toc
src/EM.cpp
src/EMx.cpp
src/Makevars
src/RcppExports.cpp
src/forward_backward.h
src/forwardbackward.cpp
src/forwardbackwardx.cpp
src/internalBackward.cpp
src/internalForward.cpp
src/logLikHMM.cpp
src/logLikMixHMM.cpp
src/logSumExp.cpp
src/log_EM.cpp
src/log_EMx.cpp
src/log_forward_backward.h
src/log_forwardbackward.cpp
src/log_forwardbackwardx.cpp
src/log_internalBackward.cpp
src/log_internalForward.cpp
src/log_logLikHMM.cpp
src/log_logLikMixHMM.cpp
src/log_objective.cpp
src/log_objectivex.cpp
src/log_optCoef.cpp
src/logsumexp.h
src/objective.cpp
src/objectivex.cpp
src/optCoef.cpp
src/optcoef.h
src/reparma.cpp
src/reparma.h
src/sa_opt_coef.cpp
src/seqHMM.h
src/uv_forwardbackward.cpp
src/varcoef.cpp
src/viterbi.cpp
src/viterbix.cpp
tests_for_graphics/test_gridplot.R tests_for_graphics/test_plot_models.R tests_for_graphics/test_ssp.R
vignettes/references.bib
vignettes/references_for_vignettes.bib
vignettes/seqHMM.R
vignettes/seqHMM.Rnw
vignettes/seqHMM_algorithms.Rnw
vignettes/seqHMM_estimation.Rnw
vignettes/seqHMM_visualization.R
vignettes/seqHMM_visualization.Rnw
helske/seqHMM documentation built on Nov. 26, 2018, 4:34 a.m.