Files in hemstrow/snpR
Whole-genome analysis tools for use with SNP data.

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
Meta/vignette.rds
NAMESPACE
R/association_functions.R R/bootstrapping_functions.R R/colony_interface.R R/dataset_documentation.R R/plotting_functions.R R/smoothing_functions.R R/snpRdata.R R/stat_functions.R R/utility_functions.R README.md
R_dev/2d_sfs_example_data.RDS
R_dev/EM_haplotype_example.R R_dev/EM_haplotype_example_Keming.R
R_dev/armitage_example.RDS
R_dev/armitage_test.R R_dev/depreciated_functions.R
R_dev/example_geno_tables.RDS
R_dev/function_development.R
R_dev/haplotype_frequency_estimation_example.RDS
R_dev/hapmat_example.RDS
R_dev/manhattan_keming.R
R_dev/manhattan_window_example.RDS
R_dev/odds_ratio_example.RDS
R_dev/to_do.rmd data-raw/stickFORMATS.R data-raw/stickRAW.R data-raw/stickSNPs.R
data/stickFORMATs.rda
data/stickRAW.rda
data/stickSNPs.rda
data/stick_NN_input.txt
doc/snpR_introduction.R doc/snpR_introduction.Rmd
doc/snpR_introduction.html
man/Facets_in_snpR.Rd man/add.facets.snpR.data.Rd man/apply.snpR.facets.Rd man/calc_association.Rd man/calc_basic_snp_stats.Rd man/calc_p_from_bootstraps.Rd man/calc_pairwise_ld.Rd man/calc_single_stats.Rd man/calc_smoothed_averages.Rd man/calc_tajimas_d.Rd man/call_colony.Rd man/check.snpR.facet.request.Rd man/check_duplicates.Rd man/cross_validate_genomic_prediction.Rd man/do_bootstraps.Rd man/filter_snps.Rd man/find.snpR.facets.Rd man/format_snps.Rd man/gaussian_weight.Rd man/get.snpR.stats.Rd man/import.snpR.data.Rd man/interpolate_sn.Rd man/merge.snpR.stats.Rd man/parse_colony.Rd man/plot_clusters.Rd man/plot_pairwise_LD_heatmap.Rd man/run_colony.Rd man/run_genomic_prediction.Rd man/sanity_check_window.Rd man/snpRdata-class.Rd man/stickFORMATs.Rd man/stickRAW.Rd man/stickSNPs.Rd man/subset_snpR_data.Rd man/tabulate_genotypes.Rd man/write_colony_input.Rd
snpR.Rproj
vignettes/snpR_introduction.Rmd
hemstrow/snpR documentation built on July 11, 2019, 8:44 p.m.