run_kmeans: K-means clustering

Description Usage Arguments

View source: R/clustering.R

Description

K-means clustering

Usage

1
run_kmeans(fce, k, expt = "sce", method = "PCA", n_dims = NULL, ...)

Arguments

fce

fce object

k

number of classes

expt

experiment to cluster (either "sce" or "fsce, defaults to "sce")

method

dimensionality reduction method for clustering (defaults to PCA)

n_dims

specify the number of dimensions from "dr" to use for clustering, defaults to all dimensions

...

additional arguments to pass to stats::kmeans()


hesselberthlab/scrunchy documentation built on Dec. 11, 2018, 1:30 a.m.