R/getPathwaysForSBML.R

In hettling/BiGGR: Constraint based modeling in R using metabolic reconstruction databases

##A function to extract all relevant pathways from a model given a specific database
getPathwaysForSBML <- function(model, database){
all.pathways <- extractPathways(database)
unique(sapply(lapply(model@reactions, function(x)x@id), function(y)all.pathways[[y]]))
}