Files in hmorlon/PANDA
Phylogenetic ANalyses of DiversificAtion

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/BICompare.R R/CreateBioGeoB_Object_subclade.R R/CreateClassObject.R R/CreateGeoObject.R R/CreateGeoObject_BioGeoBEARS.R R/CreateGeobyClassObject.R R/DDexp.rescale.R R/DDexp.rescale.geog.R R/DDexp_geo_ADiag.R R/DDexp_nogeo_ADiag.R R/DDlin.rescale.R R/DDlin.rescale.geog.R R/DDlin_geo_ADiag.R R/DDlin_nogeo_ADiag.R R/JSDtree.R R/JSDtree_cluster.R R/MC.rescale.R R/MC.rescale_geog.R R/MC_geo_PM.R R/MC_nogeo_ADiag.R R/PhenotypicModel.class.R R/Phi.R R/Psi.R R/base_sgd.R R/createModel.R R/event_txt_into_events_row.R R/events_txt_into_events_table.R R/events_txt_list_into_events_table.R R/fitTipData.R R/fit_bd.R R/fit_coal_cst.R R/fit_coal_var.R R/fit_env.R R/fit_sgd.R R/fit_t_comp.R R/fit_t_comp_subgroup.R R/fit_t_env.R R/getDataLikelihood.R R/getTipDistribution.R R/integrate.R R/likelihood_bd.R R/likelihood_coal_cst.R R/likelihood_coal_cst_mod.R R/likelihood_coal_exp_mod.R R/likelihood_coal_var.R R/likelihood_sgd.R R/likelihood_subgroup_model.R R/likelihood_t_DD.R R/likelihood_t_DD_geog.R R/likelihood_t_MC.R R/likelihood_t_MC_geog.R R/likelihood_t_env.R R/modelSelection.R R/plot.fit_t.env.r R/plot_BICompare.R R/plot_dtt.R R/plot_fit_bd.R R/plot_fit_env.R R/plot_spectR.R R/print.fit.bd.R R/print.fit.env.R R/print.fit_t.env.R R/resortGeoObject.R R/sim.convergence.geo.R R/sim.divergence.geo.R R/sim_env_bd.r R/sim_sgd.R R/sim_t_comp.R R/sim_t_env.R R/simulateTipData.R R/spectR.R R/stratified_BGB_to_tables.R R/trimSimmap.R README.md
data/Anolis.data.rda
data/BGB.examples.rda
data/Balaenopteridae.rda
data/Calomys.rda
data/Cetacea.rda
data/InfTemp.rda
data/Phocoenidae.rda
data/Phyllostomidae.rda
data/Phyllostomidae_genera.rda
data/co2.rda
data/coccolithophore.rda
data/foraminifera.rda
data/greenalgae.rda
data/landplant.rda
data/ostracoda.rda
data/radiolaria.rda
data/redalgae.rda
data/sealevel.rda
data/silica.rda
inst/CITATION
man/Anolis.data.Rd man/BGB.examples.Rd man/BICompare.Rd man/Balaenopteridae.Rd man/Calomys.Rd man/Cetacea.Rd man/CreateClassObject.Rd man/CreateGeoObject.Rd man/CreateGeoObject_BioGeoBEARS.Rd man/CreateGeobyClassObject.Rd man/InfTemp.Rd man/JSDtree.Rd man/JSDtree_cluster.Rd man/PhenotypicACDC-class.Rd man/PhenotypicADiag-class.Rd man/PhenotypicBM-class.Rd man/PhenotypicDD-class.Rd man/PhenotypicGMM-class.Rd man/PhenotypicModel-class.Rd man/PhenotypicOU-class.Rd man/PhenotypicPM-class.Rd man/Phocoenidae.Rd man/Phyllostomidae.Rd man/Phyllostomidae_genera.Rd man/RPANDA-package.Rd man/createModel.Rd man/createModelCoevolution.Rd man/fitTipData-methods.Rd man/fitTipData.Rd man/fit_bd.Rd man/fit_coal_cst.Rd man/fit_coal_var.Rd man/fit_env.Rd man/fit_sgd.Rd man/fit_t_comp.Rd man/fit_t_comp_subgroup.Rd man/fit_t_env.Rd man/getDataLikelihood-methods.Rd man/getDataLikelihood.Rd man/getTipDistribution-methods.Rd man/getTipDistribution.Rd man/likelihood_bd.Rd man/likelihood_coal_cst.Rd man/likelihood_coal_var.Rd man/likelihood_sgd.Rd man/likelihood_subgroup_model.Rd man/likelihood_t_DD.Rd man/likelihood_t_DD_geog.Rd man/likelihood_t_MC.Rd man/likelihood_t_MC_geog.Rd man/likelihood_t_env.Rd man/lines.fit_t.env.Rd man/modelSelection-methods.Rd man/modelSelection.Rd man/plot.fit_t.env.Rd man/plot_BICompare.Rd man/plot_dtt.Rd man/plot_fit_bd.Rd man/plot_fit_env.Rd man/plot_spectR.Rd man/sim.convergence.geo.Rd man/sim.divergence.geo.Rd man/sim_env_bd.Rd man/sim_sgd.Rd man/sim_t_comp.Rd man/sim_t_env.Rd man/simulateTipData-methods.Rd man/simulateTipData.Rd man/spectR.Rd tests/test-all.R tests/testthat/test-fit-bd.r tests/testthat/test-fit-coal.r tests/testthat/test-fit-env-bd.r
hmorlon/PANDA documentation built on Dec. 11, 2017, 5:43 a.m.