Files in hochwagenlab/hwglabr2

Collection of R functions used in the Hochwagen Lab

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/average_chr_signal.R R/binned_function.R R/compress_signal_track.R R/elapsed_time.R R/facs_density_plot2.R R/get_Red1_summits.R R/get_chr_coordinates.R R/get_dsb_hotspots.R R/get_gff.R R/get_intergenic_regions.R R/import_bedGraph.R R/import_wiggle.R R/io_checks.R R/opening_act2.R R/opening_act2_batch_run.R R/sequence_coverage_perchr.R R/signal_at_orf2.R R/signal_flanking_rDNA.R R/signal_from_telomeres2.R R/signal_mean_and_ci.R R/signal_track_correlation.R R/spikein_median_normalization.R R/spikein_normalization_factor.R

R/sysdata.rda

README.md

_pkgdown.yml

data-raw/data_internal.R

docs/LICENSE

docs/LICENSE.html

docs/authors.html

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/average_chr_signal.html

docs/reference/average_signal.html

docs/reference/binned_function.html

docs/reference/compress_signal_track.html

docs/reference/elapsed_time.html

docs/reference/facs_density_plot2.html

docs/reference/get_Red1_summits.html

docs/reference/get_chr_coordinates.html

docs/reference/get_dsb_hotspots.html

docs/reference/get_gff.html

docs/reference/get_intergenic_regions.html

docs/reference/import_bedGraph.html

docs/reference/import_wiggle.html

docs/reference/index.html

docs/reference/opening_act2.html

docs/reference/opening_act2_batch_run.html

docs/reference/signal_at_orf2.html

docs/reference/signal_at_position.html

docs/reference/signal_correlation.html

docs/reference/signal_flanking_rDNA.html

docs/reference/signal_from_telomeres2.html

docs/reference/signal_mean_and_ci.html

docs/reference/signal_track_correlation.html

docs/reference/spikein_normalization_factor.html

hwglabr2.Rproj

man/average_chr_signal.Rd man/binned_function.Rd man/compress_signal_track.Rd man/elapsed_time.Rd man/facs_density_plot2.Rd man/get_Red1_summits.Rd man/get_chr_coordinates.Rd man/get_dsb_hotspots.Rd man/get_gff.Rd man/get_intergenic_regions.Rd man/import_bedGraph.Rd man/import_wiggle.Rd man/opening_act2.Rd man/opening_act2_batch_run.Rd man/signal_at_orf2.Rd man/signal_flanking_rDNA.Rd man/signal_from_telomeres2.Rd man/signal_mean_and_ci.Rd man/signal_track_correlation.Rd man/spikein_median_normalization.Rd man/spikein_normalization_factor.Rd tests/testthat.R tests/testthat/test-elapsed_time.R tests/testthat/test-signal_mean_and_ci.R

wiki_images/Red1_signal_at_Red1_summits_with_CI.png

wiki_images/Red1_signal_at_Red1_summits_with_heatmap.png

wiki_images/Red1_signal_at_centromeres.png

wiki_images/Red1_signal_at_meta_ORF_with_CI.png

wiki_images/Red1_signal_at_meta_ORF_with_heatmap.png

wiki_images/Red1_signal_on_chrIII.png

hochwagenlab/hwglabr2 documentation built on Nov. 12, 2022, 7:27 p.m.