vignettes/my-vignette.R

In huatengh/Classiphy: Classify gene trees basing on the processes generating species-tree gene-tree discordance

## ----eval=FALSE----------------------------------------------------------
#  simphy.simu(simphy.executable,control.file)

## ----eval=FALSE----------------------------------------------------------
#  trainingdata<-training.data(repfolder,phylonet.path)

## ----eval=FALSE----------------------------------------------------------
#  testingdata<-sumstat(sfile,gfile,phylonet.path)

## ----eval=FALSE----------------------------------------------------------
#  result<-classifyData(target.summary.stats = testingdata,training.summary.stats = trainingdata,n.pca = 'optimize',n.da=NULL,n.pca.optimization.penalty.weight = 0)