API for hurlab/RichR
Function Enrichment analysis and Network construction

Global functions
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.calculate_Enrichment_Score Man page Source code
.clean.char Man page Source code
.color_scale Source code
.getIdx Source code
.get_go_dat Source code
.get_kg_dat Source code
.get_kgm.data Source code
.getdb Source code
.getdbname Source code
.getmsig Man page Source code
.getrodbname Source code
.getspeices Source code
.kappa Man page Source code
.kappa_cluster_internal Man page Source code
.makeGOdata Man page Source code
.makeKOMdata Man page Source code
.makeKOdata Man page Source code
.makeROdata Man page Source code
.merge_term Man page Source code
.onLoad Source code
.paste.char Man page Source code
Annot-class Man page
Annot-method Man page
GO_child Man page Source code
GSEAResult-class Man page
`$.Annot` Source code
`$.richResult` Source code
`[.Annot` Source code
`[.richResult` Source code
arrange Man page
arrange.Annot Source code
arrange.richResult Source code
as.data.frame.Annot Source code
as.data.frame.GSEAResult Source code
as.data.frame.richResult Source code
buildAnnot Man page Source code
buildMSIGDB Man page Man page Source code
buildOwn Man page Source code
compareGSEA Man page Source code
compareResult Man page
comparedot Man page
detail Man page Source code
detail.GSEAResult Man page Source code
detail.richResult Man page Source code
dim.Annot Source code
dim.richResult Source code
enrich Man page
enrich,ANY,Annot-method Man page
enrich,ANY,data.frame-method Man page
enrich_internal Man page Source code
fast_factor Source code
filter Man page
filter.Annot Source code
filter.richResult Source code
getann Man page Source code
getdetail Man page Source code
ggGSEA Man page Source code
ggbar Man page
ggbar,data.frame-method Man page
ggbar,richResult-method Man page
ggbar_internal Man page Source code
ggdot Man page
ggdot,data.frame-method Man page
ggdot,richResult-method Man page
ggdot_internal Man page Source code
ggheatmap Man page Source code
ggnetmap Man page Source code
ggnetplot Man page
ggnetplot,GSEAResult-method Man page
ggnetplot,data.frame-method Man page
ggnetplot,richResult-method Man page
ggnetwork Man page
ggnetwork,GSEAResult-method Man page
ggnetwork,data.frame-method Man page
ggnetwork,richResult-method Man page
ggnetwork_internal Man page
ggrich_internal Man page Source code
group_by Man page
group_by.Annot Source code
group_by.richResult Source code
head.Annot Source code
head.richResult Source code
hyper_bench_vector Source code
idconvert Man page Source code
msigdbinfo Man page Source code
msigdbr Man page
mutate Man page
mutate.Annot Source code
mutate.richResult Source code
name_table Source code
names.Annot Source code
names.GSEAResult Source code
names.richResult Source code
overlap Man page Source code
plot,GSEAResult-method Man page
plot,richResult-method Man page
plotGSEA Man page Source code
rbind.GSEAResult Man page Source code
rbind.richResult Man page Source code
reexports Man page
rename Man page
rename.Annot Source code
rename.richResult Source code
result Man page Source code
result.GSEAResult Source code
result.richResult Source code
reverseList Man page Source code
richCluster Man page
richCluster,data.frame-method Man page
richCluster,richResult-method Man page
richDAVID Man page Source code
richGO Man page
richGO,ANY,Annot-method Man page
richGO,ANY,data.frame-method Man page
richGO_internal Man page Source code
richGSEA Man page
richGSEA,ANY,Annot-method Man page
richGSEA,ANY,data.frame-method Man page
richGSEA_internal Man page Source code
richKEGG Man page
richKEGG,ANY,Annot-method Man page
richKEGG,ANY,data.frame-method Man page
richKEGG_internal Man page Source code
richLevel Man page
richLevel,ANY,Annot-method Man page
richLevel,ANY,data.frame-method Man page
richLevel_internal Man page Source code
richResult-class Man page
row.names.Annot Source code
row.names.GSEAResult Source code
row.names.richResult Source code
select Man page
select.Annot Source code
select.richResult Source code
sf Source code
show,GSEAResult-method Man page
show,richResult-method Man page
showData Man page Source code
slice Man page
slice.Annot Source code
slice.richResult Source code
summarise Man page
summarise.Annot Source code
summarise.richResult Source code
summary, Man page
summary,GSEAResult-method Man page
summary,richResult-method Man page
summary.GSEAResult Source code
summary.richResult Source code
tail.Annot Source code
tail.richResult Source code
uniq Source code
vec_to_df Man page Source code
hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.