GE: GO Enrichment analysis function

Description Usage Arguments Author(s)

View source: R/GE.R

Description

GO Enrichment analysis function

Usage

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GE(df, GO_FILE, OP = "BP", gene.cutoff = 0.01, minSize = 2,
  maxSize = 500, keepRich = TRUE, filename = NULL, padj.method = "BH")

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

GO_FILE:

GO annotation data

filenam:

output filename

gene.cutoff:

the cut-off value for select DGE

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.