IE.ensemble: InterPro Enrichment analysis function

Description Usage Arguments Author(s)

View source: R/IE.R

Description

InterPro Enrichment analysis function

Usage

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IE.ensemble(df, IO_FILE, gene.cutoff = 0.01, minSize = 2, maxSize = 500,
  keepRich = TRUE, padj.method = "BH", filename = NULL)

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

IO_FILE:

InterPro annotation data, you can get the data by using makeesanno function

filename:

output filename

gene.cutoff:

DGE singificant cutoff value

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.