KE: KEGG Pathway Enrichment analysis function

Description Usage Arguments

View source: R/KE.R

Description

KEGG Pathway Enrichment analysis function

Usage

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KE(df, KO_FILE, filename = NULL, gene.cutoff = 0.01, minSize = 2,
  maxSize = 500, keepRich = TRUE, padj.method = "BH")

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

KG_FILE:

KEGG Pathway annotation data

filenam:

output filename

cutoff:

DGE singificant cutoff value


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.