PE.plant: PFAM Enrichment analysis function based on ensemble plant...

Description Usage Arguments Author(s)

View source: R/PE.R

Description

PFAM Enrichment analysis function based on ensemble plant annotation data

Usage

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PE.plant(df, PO_FILE, gene.cutoff = 0.01, padj.method = "BH", minSize = 2,
  maxSize = 500, keepRich = TRUE, filename = NULL)

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

PO_FILE:

PFAM annotation data, you can get the data by using makeplantann function

filename:

output filename

gene.cutoff:

DGE singificant cutoff value

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.