RE: Reactome Pathway Enrichment analysis function

Description Usage Arguments Author(s)

View source: R/RE.R

Description

Reactome Pathway Enrichment analysis function

Usage

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RE(df, RO_FILE, keytype = "SYMBOL", species = "human", padj.method = "BH",
  minSize = 2, maxSize = 500, keepRich = TRUE, filename = NULL)

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

RO_FILE:

Reactome Pathway annotation data, you can get the data by use makeROdata or makePlantROdat function

filename:

output filename

gene.cutoff:

DGE singificant cutoff value

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.