enrich: Enrichment analysis for any type of annotation data

Description Usage Arguments Author(s)

View source: R/enrich.R

Description

Enrichment analysis for any type of annotation data

Usage

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enrich(df, annot, annot.info = NULL, minSize = 1, maxSize = 500,
  keepRich = TRUE, filename = NULL, gene.cutoff = 0.01,
  padj.method = "BH")

Arguments

df:

DGE files (DESeq2 result files) or vector contains gene names

annot:

annotation file for all genes

annot.info:

Term of all annotation

filenam:

output filename

gene.cutoff:

DGE singificant cutoff value

padj.method:

p value adjust method

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.