makeesanno: make annotation data except plant based on ENSEMBLE

Description Usage Arguments Author(s)

View source: R/biomart.R

Description

make annotation data except plant based on ENSEMBLE

Usage

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makeesanno(species = "Human", host = "uswest.ensembl.org",
  ann_type = "GO")

Arguments

host:

the ensemble API host,for plant you can use plants.ensembl.org and for human and other species you can use uswest.ensembl.org

species:

the sepcies you want to search, you can use showplant to get the species name

ann_type:

the type of function annotation(GO,KEGG,PFAM,InterPro) you want get from ensemble

Author(s)

Kai Guo


hurlab/RichR documentation built on July 30, 2018, 10:13 p.m.